Last updated on 2026-02-04 04:50:54 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| bregr | 13 | ||
| contribution | 13 | ||
| ezcox | 13 | ||
| ggpolar | 13 | ||
| metawho | 13 | ||
| regport | 13 | ||
| sigminer | 13 | ||
| tinyscholar | 13 | ||
| UCSCXenaShiny | 3 | 10 | |
| UCSCXenaTools | 1 | 12 |
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 13
Version: 2.3.1
Check: DESCRIPTION meta-information
Result: NOTE
Missing dependency on R >= 4.1.0 because package code uses the pipe
|> or function shorthand \(...) syntax added in R 4.1.0.
File(s) using such syntax:
‘show_group_enrichment.R’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
Version: 2.3.1
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘BSgenome.Hsapiens.UCSC.hg19’
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 2.3.1
Check: installed package size
Result: NOTE
installed size is 6.0Mb
sub-directories of 1Mb or more:
extdata 1.0Mb
help 1.7Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: NOTE: 3, OK: 10
Version: 2.2.0
Check: installed package size
Result: NOTE
installed size is 8.7Mb
sub-directories of 1Mb or more:
data 1.1Mb
doc 1.3Mb
shinyapp 5.6Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: ERROR: 1, OK: 12
Version: 1.6.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘USCSXenaTools.Rmd’ using rmarkdown
Quitting from USCSXenaTools.Rmd:133-136 [unnamed-chunk-6]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/dplyr:::mutate_error>
Error in `dplyr::mutate()`:
ℹ In argument: `url = ifelse(!sapply(url, http_error2), url, paste0(url,
".gz"))`.
Caused by error in `!sapply(url, http_error2)`:
! invalid argument type
---
Backtrace:
▆
1. ├─XenaQuery(df_todo) %>% XenaDownload()
2. ├─UCSCXenaTools::XenaDownload(.)
3. │ ├─base::stopifnot(...)
4. │ └─base::is.data.frame(xquery)
5. ├─UCSCXenaTools::XenaQuery(df_todo)
6. │ └─... %>% as.data.frame()
7. ├─base::as.data.frame(.)
8. ├─dplyr::select(., hosts, datasets, url)
9. ├─dplyr::mutate(...)
10. ├─dplyr:::mutate.data.frame(...)
11. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
12. │ ├─base::withCallingHandlers(...)
13. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
14. │ └─mask$eval_all_mutate(quo)
15. │ └─dplyr (local) eval()
16. └─base::ifelse(!sapply(url, http_error2), url, paste0(url, ".gz"))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'USCSXenaTools.Rmd' failed with diagnostics:
ℹ In argument: `url = ifelse(!sapply(url, http_error2), url, paste0(url,
".gz"))`.
Caused by error in `!sapply(url, http_error2)`:
! invalid argument type
--- failed re-building ‘USCSXenaTools.Rmd’
SUMMARY: processing the following file failed:
‘USCSXenaTools.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc