Last updated on 2026-02-04 04:50:24 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.6.1 | 6.77 | 66.79 | 73.56 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.6.1 | 3.77 | 45.43 | 49.20 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.6.1 | 12.00 | 103.41 | 115.41 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.6.1 | 12.00 | 120.23 | 132.23 | OK | |
| r-devel-windows-x86_64 | 1.6.1 | 11.00 | 86.00 | 97.00 | OK | |
| r-patched-linux-x86_64 | 1.6.1 | 6.62 | 58.40 | 65.02 | OK | |
| r-release-linux-x86_64 | 1.6.1 | 6.64 | 57.16 | 63.80 | OK | |
| r-release-macos-arm64 | 1.6.1 | OK | ||||
| r-release-macos-x86_64 | 1.6.1 | 4.00 | 96.00 | 100.00 | OK | |
| r-release-windows-x86_64 | 1.6.1 | 9.00 | 87.00 | 96.00 | OK | |
| r-oldrel-macos-arm64 | 1.6.1 | OK | ||||
| r-oldrel-macos-x86_64 | 1.6.1 | 5.00 | 92.00 | 97.00 | OK | |
| r-oldrel-windows-x86_64 | 1.6.1 | 12.00 | 102.00 | 114.00 | OK |
Version: 1.6.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘USCSXenaTools.Rmd’ using rmarkdown
Quitting from USCSXenaTools.Rmd:133-136 [unnamed-chunk-6]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/dplyr:::mutate_error>
Error in `dplyr::mutate()`:
ℹ In argument: `url = ifelse(!sapply(url, http_error2), url, paste0(url,
".gz"))`.
Caused by error in `!sapply(url, http_error2)`:
! invalid argument type
---
Backtrace:
▆
1. ├─XenaQuery(df_todo) %>% XenaDownload()
2. ├─UCSCXenaTools::XenaDownload(.)
3. │ ├─base::stopifnot(...)
4. │ └─base::is.data.frame(xquery)
5. ├─UCSCXenaTools::XenaQuery(df_todo)
6. │ └─... %>% as.data.frame()
7. ├─base::as.data.frame(.)
8. ├─dplyr::select(., hosts, datasets, url)
9. ├─dplyr::mutate(...)
10. ├─dplyr:::mutate.data.frame(...)
11. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
12. │ ├─base::withCallingHandlers(...)
13. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
14. │ └─mask$eval_all_mutate(quo)
15. │ └─dplyr (local) eval()
16. └─base::ifelse(!sapply(url, http_error2), url, paste0(url, ".gz"))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'USCSXenaTools.Rmd' failed with diagnostics:
ℹ In argument: `url = ifelse(!sapply(url, http_error2), url, paste0(url,
".gz"))`.
Caused by error in `!sapply(url, http_error2)`:
! invalid argument type
--- failed re-building ‘USCSXenaTools.Rmd’
SUMMARY: processing the following file failed:
‘USCSXenaTools.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc