Last updated on 2025-09-26 03:52:49 CEST.
| Package | ERROR | OK |
|---|---|---|
| geneHapR | 1 | 12 |
| lolliplot | 13 |
Current CRAN status: ERROR: 1, OK: 12
Version: 1.2.4
Check: examples
Result: ERROR
Running examples in ‘geneHapR-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: LDheatmap
> ### Title: This function produces a pairwise LD plot.
> ### Aliases: LDheatmap plot_LDheatmap
>
> ### ** Examples
>
> # Pass LDheatmap a SnpMatrix object
> data(geneHapR_test)
> plot_LDheatmap(hap = hapResult,
+ gff = gff,
+ Chr = hapResult[1,2],
+ start = 4000, end = 8200)
Warning in LDheatmap(gdat, gff = gff, Chr = Chr, start = start, end = end, :
Only bi-alleles supported,Variables with less or more than 2 allels will be omitted.
Loading required namespace: GenomeInfoDb
Failed with error: ‘there is no package called ‘GenomeInfoDb’’
Error in h(simpleError(msg, call)) :
error in evaluating the argument 'i' in selecting a method for function '[': unable to load required package ‘GenomeInfoDb’
Calls: plot_LDheatmap ... vapply -> FUN -> is -> getClassDef -> .requirePackage
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Current CRAN status: OK: 13