Last updated on 2026-02-04 04:50:52 CET.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [104s/580s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.547, system: 0.047, elapsed: 3.861 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.644, system: 0.102, elapsed: 15.239 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.227, system: 0.018, elapsed: 0.892 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.140, system: 0.753, elapsed: 26.247 seconds]
Computing values for grid cells...
... done. [user: 0.179, system: 0.007, elapsed: 0.248 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.316, system: 0.952, elapsed: 47.610 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.771, system: 0.080, elapsed: 2.279 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.838, system: 0.253, elapsed: 14.923 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.217, system: 0.019, elapsed: 1.000 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.997, system: 0.860, elapsed: 137.340 seconds]
Computing values for grid cells...
... done. [user: 0.172, system: 0.004, elapsed: 0.433 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.573, system: 1.246, elapsed: 156.821 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.521, system: 0.032, elapsed: 4.185 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.628, system: 0.059, elapsed: 25.829 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.315, system: 0.019, elapsed: 1.392 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.099, system: 0.952, elapsed: 181.811 seconds]
Computing values for grid cells...
... done. [user: 0.182, system: 0.005, elapsed: 0.471 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.282, system: 0.350, elapsed: 2.190 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 20.720, system: 1.456, elapsed: 217.576 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.590, system: 0.041, elapsed: 4.611 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.594, system: 0.089, elapsed: 24.437 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.221, system: 0.017, elapsed: 1.197 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.361, system: 0.871, elapsed: 91.511 seconds]
Computing values for grid cells...
... done. [user: 0.189, system: 0.005, elapsed: 0.287 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 13.356, system: 0.848, elapsed: 21.002 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 33.021, system: 1.906, elapsed: 144.577 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [2m/11m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.897, system: 0.115, elapsed: 2.692 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.860, system: 0.293, elapsed: 24.559 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.233, system: 0.021, elapsed: 1.336 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.925, system: 0.915, elapsed: 181.989 seconds]
Computing values for grid cells...
... done. [user: 0.168, system: 0.003, elapsed: 0.472 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.685, system: 1.376, elapsed: 212.442 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.582, system: 0.032, elapsed: 4.589 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.535, system: 0.053, elapsed: 26.417 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.217, system: 0.016, elapsed: 1.213 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.891, system: 0.945, elapsed: 181.539 seconds]
Computing values for grid cells...
... done. [user: 0.167, system: 0.004, elapsed: 0.497 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 18.962, system: 1.072, elapsed: 215.754 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.570, system: 0.034, elapsed: 4.840 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.564, system: 0.057, elapsed: 25.421 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.218, system: 0.017, elapsed: 1.230 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.742, system: 0.755, elapsed: 85.629 seconds]
Computing values for grid cells...
... done. [user: 0.171, system: 0.003, elapsed: 0.224 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.135, system: 0.287, elapsed: 0.937 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 20.080, system: 1.180, elapsed: 119.848 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.613, system: 0.033, elapsed: 2.556 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.583, system: 0.088, elapsed: 14.868 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.214, system: 0.015, elapsed: 0.560 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.228, system: 0.735, elapsed: 15.377 seconds]
Computing values for grid cells...
... done. [user: 0.163, system: 0.003, elapsed: 0.176 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 11.328, system: 0.614, elapsed: 41.409 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 30.797, system: 1.512, elapsed: 75.822 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64