Last updated on 2025-07-08 04:49:56 CEST.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [79s/127s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.502, system: 0.043, elapsed: 2.119 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.019, system: 0.120, elapsed: 14.157 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.194, system: 0.016, elapsed: 0.378 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.770, system: 0.205, elapsed: 6.390 seconds]
Computing values for grid cells...
... done. [user: 0.165, system: 0.003, elapsed: 0.249 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.197, system: 0.410, elapsed: 24.106 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.511, system: 0.041, elapsed: 2.432 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.002, system: 0.102, elapsed: 14.491 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.185, system: 0.012, elapsed: 0.320 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.826, system: 0.186, elapsed: 6.373 seconds]
Computing values for grid cells...
... done. [user: 0.162, system: 0.004, elapsed: 0.208 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.226, system: 0.366, elapsed: 24.785 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.536, system: 0.037, elapsed: 2.146 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.972, system: 0.079, elapsed: 12.316 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.184, system: 0.011, elapsed: 0.206 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.670, system: 0.175, elapsed: 6.263 seconds]
Computing values for grid cells...
... done. [user: 0.162, system: 0.004, elapsed: 0.404 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.160, system: 0.223, elapsed: 1.822 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.297, system: 0.548, elapsed: 24.121 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.452, system: 0.028, elapsed: 3.661 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.998, system: 0.084, elapsed: 19.884 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.185, system: 0.012, elapsed: 0.321 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.770, system: 0.222, elapsed: 6.491 seconds]
Computing values for grid cells...
... done. [user: 0.169, system: 0.005, elapsed: 0.303 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.298, system: 0.584, elapsed: 15.429 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 25.510, system: 0.966, elapsed: 47.406 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [78s/101s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.492, system: 0.039, elapsed: 1.600 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.279, system: 0.043, elapsed: 9.013 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.187, system: 0.013, elapsed: 0.294 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.652, system: 0.198, elapsed: 5.893 seconds]
Computing values for grid cells...
... done. [user: 0.159, system: 0.004, elapsed: 0.219 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 14.296, system: 0.313, elapsed: 17.710 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.493, system: 0.034, elapsed: 2.133 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.027, system: 0.061, elapsed: 14.297 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.184, system: 0.011, elapsed: 0.279 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.502, system: 0.167, elapsed: 5.242 seconds]
Computing values for grid cells...
... done. [user: 0.154, system: 0.003, elapsed: 0.218 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 14.901, system: 0.295, elapsed: 22.960 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.538, system: 0.026, elapsed: 2.493 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.933, system: 0.063, elapsed: 12.238 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.183, system: 0.011, elapsed: 0.271 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.507, system: 0.170, elapsed: 5.354 seconds]
Computing values for grid cells...
... done. [user: 0.170, system: 0.004, elapsed: 0.250 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.089, system: 0.261, elapsed: 1.016 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.050, system: 0.557, elapsed: 22.597 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.552, system: 0.043, elapsed: 2.283 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.030, system: 0.056, elapsed: 10.707 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.190, system: 0.011, elapsed: 0.217 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.503, system: 0.159, elapsed: 4.114 seconds]
Computing values for grid cells...
... done. [user: 0.164, system: 0.003, elapsed: 0.206 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.260, system: 0.585, elapsed: 13.203 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 25.380, system: 0.888, elapsed: 31.735 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64