Last updated on 2025-11-13 03:51:48 CET.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [87s/128s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.749, system: 0.097, elapsed: 2.600 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.800, system: 0.368, elapsed: 14.122 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.192, system: 0.015, elapsed: 0.213 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.195, system: 0.340, elapsed: 6.322 seconds]
Computing values for grid cells...
... done. [user: 0.185, system: 0.012, elapsed: 0.287 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.677, system: 0.867, elapsed: 24.325 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.781, system: 0.092, elapsed: 2.653 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.733, system: 0.335, elapsed: 12.999 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.203, system: 0.021, elapsed: 0.340 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.905, system: 0.205, elapsed: 5.861 seconds]
Computing values for grid cells...
... done. [user: 0.168, system: 0.004, elapsed: 0.249 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.339, system: 0.692, elapsed: 22.930 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.698, system: 0.053, elapsed: 2.707 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.837, system: 0.311, elapsed: 16.935 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.198, system: 0.014, elapsed: 0.235 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.098, system: 0.311, elapsed: 5.275 seconds]
Computing values for grid cells...
... done. [user: 0.184, system: 0.010, elapsed: 0.228 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.294, system: 0.320, elapsed: 1.377 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.942, system: 1.053, elapsed: 27.642 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.691, system: 0.075, elapsed: 2.112 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.564, system: 0.119, elapsed: 16.370 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.198, system: 0.013, elapsed: 0.386 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.951, system: 0.185, elapsed: 6.512 seconds]
Computing values for grid cells...
... done. [user: 0.183, system: 0.005, elapsed: 0.336 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.962, system: 0.517, elapsed: 17.765 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 27.216, system: 0.952, elapsed: 44.478 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [83s/151s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.622, system: 0.039, elapsed: 3.032 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.494, system: 0.083, elapsed: 19.313 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.193, system: 0.015, elapsed: 0.456 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.824, system: 0.197, elapsed: 7.945 seconds]
Computing values for grid cells...
... done. [user: 0.184, system: 0.006, elapsed: 0.346 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.877, system: 0.369, elapsed: 32.153 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.635, system: 0.041, elapsed: 3.017 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.544, system: 0.106, elapsed: 17.422 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.193, system: 0.013, elapsed: 0.341 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.765, system: 0.168, elapsed: 6.363 seconds]
Computing values for grid cells...
... done. [user: 0.180, system: 0.006, elapsed: 0.364 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.874, system: 0.373, elapsed: 28.469 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.587, system: 0.028, elapsed: 2.973 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.508, system: 0.060, elapsed: 17.313 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.190, system: 0.011, elapsed: 0.410 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.757, system: 0.170, elapsed: 7.324 seconds]
Computing values for grid cells...
... done. [user: 0.177, system: 0.008, elapsed: 0.295 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.147, system: 0.240, elapsed: 1.223 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.020, system: 0.563, elapsed: 30.831 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.628, system: 0.036, elapsed: 3.249 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.651, system: 0.095, elapsed: 18.943 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.198, system: 0.012, elapsed: 0.277 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.845, system: 0.199, elapsed: 7.467 seconds]
Computing values for grid cells...
... done. [user: 0.170, system: 0.003, elapsed: 0.290 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.631, system: 0.483, elapsed: 19.148 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 26.791, system: 0.857, elapsed: 50.599 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64