Last updated on 2026-02-04 04:50:22 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.5.1 | 16.00 | 272.64 | 288.64 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.5.1 | 10.52 | 179.37 | 189.89 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.5.1 | 27.00 | 348.87 | 375.87 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 0.5.1 | 25.00 | 411.54 | 436.54 | ERROR | |
| r-devel-windows-x86_64 | 0.5.1 | 17.00 | 260.00 | 277.00 | OK | |
| r-patched-linux-x86_64 | 0.5.1 | 16.41 | 248.18 | 264.59 | OK | |
| r-release-linux-x86_64 | 0.5.1 | 14.04 | 245.89 | 259.93 | OK | |
| r-release-macos-arm64 | 0.5.1 | OK | ||||
| r-release-macos-x86_64 | 0.5.1 | 9.00 | 166.00 | 175.00 | OK | |
| r-release-windows-x86_64 | 0.5.1 | 17.00 | 256.00 | 273.00 | OK | |
| r-oldrel-macos-arm64 | 0.5.1 | NOTE | ||||
| r-oldrel-macos-x86_64 | 0.5.1 | 9.00 | 147.00 | 156.00 | NOTE | |
| r-oldrel-windows-x86_64 | 0.5.1 | 25.00 | 326.00 | 351.00 | NOTE |
Version: 0.5.1
Check: examples
Result: ERROR
Running examples in ‘survminer-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: surv_fit
> ### Title: Create Survival Curves
> ### Aliases: surv_fit
>
> ### ** Examples
>
>
> library("survival")
Attaching package: ‘survival’
The following object is masked from ‘package:survminer’:
myeloma
> library("magrittr")
>
> # Case 1: One formula and One data set
> #:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
> fit <- surv_fit(Surv(time, status) ~ sex,
+ data = colon)
> surv_pvalue(fit)
variable pval method pval.txt
1 sex 0.6107936 Log-rank p = 0.61
>
>
> # Case 2: List of formulas and One data set.
> # - Different formulas are applied to the same data set
> # - Returns a (named) list of survfit objects
> #:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
> # Create a named list of formulas
> formulas <- list(
+ sex = Surv(time, status) ~ sex,
+ rx = Surv(time, status) ~ rx
+ )
>
> # Fit survival curves for each formula
> fit <- surv_fit(formulas, data = colon)
> surv_pvalue(fit)
$`colon::sex`
variable pval method pval.txt
1 sex 0.6107936 Log-rank p = 0.61
$`colon::rx`
variable pval method pval.txt
1 rx 4.990735e-08 Log-rank p < 0.0001
>
> # Case 3: One formula and List of data sets
> #:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
> fit <- surv_fit(Surv(time, status) ~ sex,
+ data = list(colon, lung))
> surv_pvalue(fit)
$`colon::sex`
variable pval method pval.txt
1 sex 0.6107936 Log-rank p = 0.61
$`lung::sex`
variable pval method pval.txt
1 sex 0.001311165 Log-rank p = 0.0013
>
>
> # Case 4: List of formulas and List of data sets
> # - Each formula is applied to each of the data in the data list
> # - argument: match.fd = FALSE
> #:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
>
> # Create two data sets
> set.seed(123)
> colon1 <- dplyr::sample_frac(colon, 1/2)
> set.seed(1234)
> colon2 <- dplyr::sample_frac(colon, 1/2)
>
> # Create a named list of formulas
> formula.list <- list(
+ sex = Surv(time, status) ~ sex,
+ adhere = Surv(time, status) ~ adhere,
+ rx = Surv(time, status) ~ rx
+ )
>
> # Fit survival curves
> fit <- surv_fit(formula.list, data = list(colon1, colon2),
+ match.fd = FALSE)
Error:
! `combine()` was deprecated in dplyr 1.0.0 and is now defunct.
ℹ Please use `vctrs::vec_c()` instead.
Backtrace:
▆
1. ├─survminer::surv_fit(...)
2. │ └─purrr::map(formula, .map_each, data) %>% dplyr::combine()
3. └─dplyr::combine(.)
4. └─lifecycle::deprecate_stop("1.0.0", "combine()", "vctrs::vec_c()")
5. └─lifecycle:::deprecate_stop0(msg)
6. └─rlang::cnd_signal(...)
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
ggsurvplot_group_by 4.828 0.032 5.249
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.5.1
Check: examples
Result: ERROR
Running examples in ‘survminer-Ex.R’ failed
The error most likely occurred in:
> ### Name: surv_fit
> ### Title: Create Survival Curves
> ### Aliases: surv_fit
>
> ### ** Examples
>
>
> library("survival")
Attaching package: ‘survival’
The following object is masked from ‘package:survminer’:
myeloma
> library("magrittr")
>
> # Case 1: One formula and One data set
> #:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
> fit <- surv_fit(Surv(time, status) ~ sex,
+ data = colon)
> surv_pvalue(fit)
variable pval method pval.txt
1 sex 0.6107936 Log-rank p = 0.61
>
>
> # Case 2: List of formulas and One data set.
> # - Different formulas are applied to the same data set
> # - Returns a (named) list of survfit objects
> #:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
> # Create a named list of formulas
> formulas <- list(
+ sex = Surv(time, status) ~ sex,
+ rx = Surv(time, status) ~ rx
+ )
>
> # Fit survival curves for each formula
> fit <- surv_fit(formulas, data = colon)
> surv_pvalue(fit)
$`colon::sex`
variable pval method pval.txt
1 sex 0.6107936 Log-rank p = 0.61
$`colon::rx`
variable pval method pval.txt
1 rx 4.990735e-08 Log-rank p < 0.0001
>
> # Case 3: One formula and List of data sets
> #:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
> fit <- surv_fit(Surv(time, status) ~ sex,
+ data = list(colon, lung))
> surv_pvalue(fit)
$`colon::sex`
variable pval method pval.txt
1 sex 0.6107936 Log-rank p = 0.61
$`lung::sex`
variable pval method pval.txt
1 sex 0.001311165 Log-rank p = 0.0013
>
>
> # Case 4: List of formulas and List of data sets
> # - Each formula is applied to each of the data in the data list
> # - argument: match.fd = FALSE
> #:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
>
> # Create two data sets
> set.seed(123)
> colon1 <- dplyr::sample_frac(colon, 1/2)
> set.seed(1234)
> colon2 <- dplyr::sample_frac(colon, 1/2)
>
> # Create a named list of formulas
> formula.list <- list(
+ sex = Surv(time, status) ~ sex,
+ adhere = Surv(time, status) ~ adhere,
+ rx = Surv(time, status) ~ rx
+ )
>
> # Fit survival curves
> fit <- surv_fit(formula.list, data = list(colon1, colon2),
+ match.fd = FALSE)
Error:
! `combine()` was deprecated in dplyr 1.0.0 and is now defunct.
ℹ Please use `vctrs::vec_c()` instead.
Backtrace:
▆
1. ├─survminer::surv_fit(...)
2. │ └─purrr::map(formula, .map_each, data) %>% dplyr::combine()
3. └─dplyr::combine(.)
4. └─lifecycle::deprecate_stop("1.0.0", "combine()", "vctrs::vec_c()")
5. └─lifecycle:::deprecate_stop0(msg)
6. └─rlang::cnd_signal(...)
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.5.1
Check: installed package size
Result: NOTE
installed size is 6.0Mb
sub-directories of 1Mb or more:
doc 5.5Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64