Last updated on 2026-02-04 04:50:47 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| miesmuschel | 13 | ||
| mlr | 2 | 11 | |
| mlr3pipelines | 4 | 9 | |
| paradox | 13 | ||
| ParamHelpers | 13 |
Current CRAN status: OK: 13
Current CRAN status: NOTE: 2, OK: 11
Version: 2.19.3
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘Rmpi’
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 2.19.3
Check: installed package size
Result: NOTE
installed size is 5.6Mb
sub-directories of 1Mb or more:
R 2.0Mb
data 2.3Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: ERROR: 4, OK: 9
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [488s/242s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
Saving _problems/test_filter_ensemble-294.R
Saving _problems/test_filter_ensemble-307.R
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-depr
> test_mlr_graphs_robustify.R: ecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R:
> test_multiplicities.R: [1]
> test_multiplicities.R: 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_isomap.R: 2026-02-03 04:51:33.591216: Isomap START
> test_pipeop_isomap.R: 2026-02-03 04:51:33.593428: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 04:51:33.603933: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 04:51:33.62289: Classical Scaling
> test_pipeop_isomap.R: 2026-02-03 04:51:33.677984: Isomap START
> test_pipeop_isomap.R: 2026-02-03 04:51:33.67846: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 04:51:33.68585: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 04:51:33.703682: Classical Scaling
> test_pipeop_isomap.R: 2026-02-03 04:51:33.73178: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-03 04:51:33.732453: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 04:51:33.74637: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 04:51:33.788973: embedding
> test_pipeop_isomap.R: 2026-02-03 04:51:33.790092: DONE
> test_pipeop_isomap.R: 2026-02-03 04:51:33.822519: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-03 04:51:33.822989: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 04:51:33.838827: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 04:51:33.879396: embedding
> test_pipeop_isomap.R: 2026-02-03 04:51:33.880697: DONE
> test_pipeop_isomap.R: 2026-02-03 04:51:33.973358: Isomap START
> test_pipeop_isomap.R: 2026-02-03 04:51:33.973804: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 04:51:34.011797: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 04:51:34.107509: Classical Scaling
> test_pipeop_isomap.R: 2026-02-03 04:51:34.144359: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-03 04:51:34.145037: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 04:51:34.170583: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 04:51:34.36366: embedding
> test_pipeop_isomap.R: 2026-02-03 04:51:34.367803: DONE
> test_pipeop_isomap.R: 2026-02-03 04:51:34.519492: Isomap START
> test_pipeop_isomap.R: 2026-02-03 04:51:34.519962: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 04:51:34.527302: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 04:51:34.54808: Classical Scaling
> test_pipeop_isomap.R: 2026-02-03 04:51:34.582989: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-03 04:51:34.583663: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 04:51:34.598642: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 04:51:34.637562: embedding
> test_pipeop_isomap.R: 2026-02-03 04:51:34.640276: DONE
> test_pipeop_isomap.R: 2026-02-03 04:51:34.789925: Isomap START
> test_pipeop_isomap.R: 2026-02-03 04:51:34.790399: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 04:51:34.79993: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 04:51:34.818546: Classical Scaling
> test_pipeop_isomap.R: 2026-02-03 04:51:34.871274: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-03 04:51:34.871939: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 04:51:34.887447: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 04:51:34.929173: embedding
> test_pipeop_isomap.R: 2026-02-03 04:51:34.930439: DONE
> test_pipeop_isomap.R: 2026-02-03 04:51:35.036318: Isomap START
> test_pipeop_isomap.R: 2026-02-03 04:51:35.036798: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 04:51:35.045685: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 04:51:35.065105: Classical Scaling
> test_pipeop_isomap.R: 2026-02-03 04:51:35.141524: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-03 04:51:35.142203: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 04:51:35.156051: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 04:51:35.19831: embedding
> test_pipeop_isomap.R: 2026-02-03 04:51:35.1995: DONE
> test_pipeop_isomap.R: 2026-02-03 04:51:35.284963: Isomap START
> test_pipeop_isomap.R: 2026-02-03 04:51:35.285413: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 04:51:35.294199: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 04:51:35.312884: Classical Scaling
> test_pipeop_isomap.R: 2026-02-03 04:51:35.369542: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-03 04:51:35.370255: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 04:51:35.384516: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 04:51:35.426895: embedding
> test_pipeop_isomap.R: 2026-02-03 04:51:35.428144: DONE
> test_pipeop_isomap.R: 2026-02-03 04:51:35.516328: Isomap START
> test_pipeop_isomap.R: 2026-02-03 04:51:35.516793: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 04:51:35.5258: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 04:51:35.544499: Classical Scaling
> test_pipeop_isomap.R: 2026-02-03 04:51:35.601755: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-03 04:51:35.602459: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 04:51:35.616527: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 04:51:35.658291: embedding
> test_pipeop_isomap.R: 2026-02-03 04:51:35.659514: DONE
> test_pipeop_isomap.R: 2026-02-03 04:51:35.759002: Isomap START
> test_pipeop_isomap.R: 2026-02-03 04:51:35.759484: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 04:51:35.767092: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 04:51:35.787857: Classical Scaling
> test_pipeop_isomap.R: 2026-02-03 04:51:35.880538: Isomap START
> test_pipeop_isomap.R: 2026-02-03 04:51:35.881011: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 04:51:35.902294: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 04:51:35.921105: Classical Scaling
> test_pipeop_isomap.R: 2026-02-03 04:51:35.947976: Isomap START
> test_pipeop_isomap.R: 2026-02-03 04:51:35.948458: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 04:51:35.955863: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 04:51:35.97501: Classical Scaling
> test_pipeop_nmf.R: [PipeOpNMFstate]
> test_pipeop_nmf.R: [PipeOpNMFstate]
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 2 | WARN 0 | SKIP 100 | PASS 13055 ]
══ Skipped tests (100) ═════════════════════════════════════════════════════════
• On CRAN (96): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_colapply.R:9:3', 'test_pipeop_collapsefactors.R:6:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_datefeatures.R:10:3', 'test_pipeop_encodeimpact.R:11:3',
'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3',
'test_pipeop_encodelmer.R:80:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_featureunion.R:9:3',
'test_pipeop_featureunion.R:134:3', 'test_pipeop_filter.R:7:3',
'test_pipeop_fixfactors.R:9:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_ensemble.R:6:3',
'test_pipeop_impute.R:4:3', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_isomap.R:10:3', 'test_pipeop_kernelpca.R:9:3',
'test_pipeop_learner.R:17:3', 'test_pipeop_info.R:6:3',
'test_pipeop_learnerpicvplus.R:163:3', 'test_pipeop_learnercv.R:31:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_mutate.R:9:3',
'test_pipeop_nearmiss.R:7:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_spatialsign.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetmutate.R:5:3',
'test_pipeop_targettrafo.R:4:3', 'test_pipeop_targettrafoscalerange.R:5:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_filter_ensemble.R:294:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all(is.nan(permutation_filter$scores[task$feature_names]))` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_filter_ensemble.R:307:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all.equal(object, expected, check.environment = FALSE, ...)` to be TRUE.
Differences:
`actual` is a character vector ('Mean relative difference: 0.2819739')
`expected` is a logical vector (TRUE)
Backtrace:
▆
1. └─global expect_equal(combined_scores, variance_scores * weights[["variance"]]) at test_filter_ensemble.R:307:3
2. └─testthat::expect_true(...)
[ FAIL 2 | WARN 0 | SKIP 100 | PASS 13055 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.10.0
Check: examples
Result: ERROR
Running examples in ‘mlr3pipelines-Ex.R’ failed
The error most likely occurred in:
> ### Name: mlr_pipeops_nmf
> ### Title: Non-negative Matrix Factorization
> ### Aliases: mlr_pipeops_nmf PipeOpNMF
>
> ### ** Examples
>
> ## Don't show:
> if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ # NMF attaches these packages to search path on load, #929
+ lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE)
+ ## End(Don't show)
+ library("mlr3")
+
+ task = tsk("iris")
+ pop = po("nmf")
+
+ task$data()
+ pop$train(list(task))[[1]]$data()
+
+ pop$state
+ ## Don't show:
+ # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112
+ # Necessary as detaching packages does not remove registered S3 methods
+ suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE))
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
> lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"),
+ detach, character.only = TRUE)
Error in FUN(X[[i]], ...) : invalid 'name' argument
Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [112s/56s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-02-04 11:17:37.206165: Isomap START
> test_pipeop_isomap.R: 2026-02-04 11:17:37.206442: constructing knn graph
> test_pipeop_isomap.R: 2026-02-04 11:17:37.209693: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-04 11:17:37.21585: Classical Scaling
> test_pipeop_isomap.R: 2026-02-04 11:17:37.227632: Isomap START
> test_pipeop_isomap.R: 2026-02-04 11:17:37.227784: constructing knn graph
> test_pipeop_isomap.R: 2026-02-04 11:17:37.23015: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-04 11:17:37.236278: Classical Scaling
> test_pipeop_isomap.R: 2026-02-04 11:17:37.2435: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-04 11:17:37.243681: constructing knn graph
> test_pipeop_isomap.R: 2026-02-04 11:17:37.248407: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-04 11:17:37.264022: embedding
> test_pipeop_isomap.R: 2026-02-04 11:17:37.264423: DONE
> test_pipeop_isomap.R: 2026-02-04 11:17:37.270356: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-04 11:17:37.270477: constructing knn graph
> test_pipeop_isomap.R: 2026-02-04 11:17:37.274849: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-04 11:17:37.289896: embedding
> test_pipeop_isomap.R: 2026-02-04 11:17:37.29023: DONE
> test_pipeop_isomap.R: 2026-02-04 11:17:37.309228: Isomap START
> test_pipeop_isomap.R: 2026-02-04 11:17:37.309342: constructing knn graph
> test_pipeop_isomap.R: 2026-02-04 11:17:37.313885: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-04 11:17:37.34846: Classical Scaling
> test_pipeop_isomap.R: 2026-02-04 11:17:37.357503: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-04 11:17:37.357687: constructing knn graph
> test_pipeop_isomap.R: 2026-02-04 11:17:37.371446: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-04 11:17:37.45116: embedding
> test_pipeop_isomap.R: 2026-02-04 11:17:37.452343: DONE
> test_pipeop_isomap.R: 2026-02-04 11:17:37.488145: Isomap START
> test_pipeop_isomap.R: 2026-02-04 11:17:37.488277: constructing knn graph
> test_pipeop_isomap.R: 2026-02-04 11:17:37.490755: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-04 11:17:37.497171: Classical Scaling
> test_pipeop_isomap.R: 2026-02-04 11:17:37.504159: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-04 11:17:37.504353: constructing knn graph
> test_pipeop_isomap.R: 2026-02-04 11:17:37.509176: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-04 11:17:37.524847: embedding
> test_pipeop_isomap.R: 2026-02-04 11:17:37.525276: DONE
> test_pipeop_isomap.R: 2026-02-04 11:17:37.755116: Isomap START
> test_pipeop_isomap.R: 2026-02-04 11:17:37.755242: constructing knn graph
> test_pipeop_isomap.R: 2026-02-04 11:17:37.757447: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-04 11:17:37.763133: Classical Scaling
> test_pipeop_isomap.R: 2026-02-04 11:17:37.779231: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-04 11:17:37.779437: constructing knn graph
> test_pipeop_isomap.R: 2026-02-04 11:17:37.78426: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-04 11:17:37.799318: embedding
> test_pipeop_isomap.R: 2026-02-04 11:17:37.799714: DONE
> test_pipeop_isomap.R: 2026-02-04 11:17:37.816365: Isomap START
> test_pipeop_isomap.R: 2026-02-04 11:17:37.816481: constructing knn graph
> test_pipeop_isomap.R: 2026-02-04 11:17:37.818882: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-04 11:17:37.824996: Classical Scaling
> test_pipeop_isomap.R: 2026-02-04 11:17:37.83628: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-04 11:17:37.836429: constructing knn graph
> test_pipeop_isomap.R: 2026-02-04 11:17:37.840553: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-04 11:17:37.853845: embedding
> test_pipeop_isomap.R: 2026-02-04 11:17:37.854177: DONE
> test_pipeop_isomap.R: 2026-02-04 11:17:37.872833: Isomap START
> test_pipeop_isomap.R: 2026-02-04 11:17:37.872966: constructing knn graph
> test_pipeop_isomap.R: 2026-02-04 11:17:37.875296: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-04 11:17:37.881547: Classical Scaling
> test_pipeop_isomap.R: 2026-02-04 11:17:37.893492: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-04 11:17:37.893659: constructing knn graph
> test_pipeop_isomap.R: 2026-02-04 11:17:37.898391: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-04 11:17:37.911896: embedding
> test_pipeop_isomap.R: 2026-02-04 11:17:37.912184: DONE
> test_pipeop_isomap.R: 2026-02-04 11:17:37.936828: Isomap START
> test_pipeop_isomap.R: 2026-02-04 11:17:37.936964: constructing knn graph
> test_pipeop_isomap.R: 2026-02-04 11:17:37.939261: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-04 11:17:37.945408: Classical Scaling
> test_pipeop_isomap.R: 2026-02-04 11:17:37.956777: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-04 11:17:37.95718: constructing knn graph
> test_pipeop_isomap.R: 2026-02-04 11:17:37.961389: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-04 11:17:37.976169: embedding
> test_pipeop_isomap.R: 2026-02-04 11:17:37.976582: DONE
> test_pipeop_isomap.R: 2026-02-04 11:17:37.997095: Isomap START
> test_pipeop_isomap.R: 2026-02-04 11:17:37.997218: constructing knn graph
> test_pipeop_isomap.R: 2026-02-04 11:17:37.99963: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-04 11:17:38.005844: Classical Scaling
> test_pipeop_isomap.R: 2026-02-04 11:17:38.024767: Isomap START
> test_pipeop_isomap.R: 2026-02-04 11:17:38.024891: constructing knn graph
> test_pipeop_isomap.R: 2026-02-04 11:17:38.027233: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-04 11:17:38.033703: Classical Scaling
> test_pipeop_isomap.R: 2026-02-04 11:17:38.039397: Isomap START
> test_pipeop_isomap.R: 2026-02-04 11:17:38.039513: constructing knn graph
> test_pipeop_isomap.R: 2026-02-04 11:17:38.04181: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-04 11:17:38.047984: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_classweights.R:10:3', 'test_pipeop_boxcox.R:7:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_renamecolumns.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [320s/406s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-02-03 21:31:57.326657: Isomap START
> test_pipeop_isomap.R: 2026-02-03 21:31:57.327178: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 21:31:57.356491: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 21:31:57.406478: Classical Scaling
> test_pipeop_isomap.R: 2026-02-03 21:31:57.512495: Isomap START
> test_pipeop_isomap.R: 2026-02-03 21:31:57.512803: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 21:31:57.51961: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 21:31:57.567195: Classical Scaling
> test_pipeop_isomap.R: 2026-02-03 21:31:57.619216: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-03 21:31:57.619668: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 21:31:57.665002: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 21:31:57.780814: embedding
> test_pipeop_isomap.R: 2026-02-03 21:31:57.78198: DONE
> test_pipeop_isomap.R: 2026-02-03 21:31:57.812156: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-03 21:31:57.81246: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 21:31:57.865252: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 21:31:57.971751: embedding
> test_pipeop_isomap.R: 2026-02-03 21:31:57.973973: DONE
> test_pipeop_isomap.R: 2026-02-03 21:31:58.133183: Isomap START
> test_pipeop_isomap.R: 2026-02-03 21:31:58.133474: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 21:31:58.216438: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 21:31:58.452886: Classical Scaling
> test_pipeop_isomap.R: 2026-02-03 21:31:58.535833: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-03 21:31:58.536249: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 21:31:58.609482: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 21:31:59.108869: embedding
> test_pipeop_isomap.R: 2026-02-03 21:31:59.130622: DONE
> test_pipeop_isomap.R: 2026-02-03 21:31:59.416015: Isomap START
> test_pipeop_isomap.R: 2026-02-03 21:31:59.416295: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 21:31:59.438076: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 21:31:59.470686: Classical Scaling
> test_pipeop_isomap.R: 2026-02-03 21:31:59.52554: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-03 21:31:59.544909: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 21:31:59.558134: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 21:31:59.683713: embedding
> test_pipeop_isomap.R: 2026-02-03 21:31:59.684888: DONE
> test_pipeop_isomap.R: 2026-02-03 21:31:59.955631: Isomap START
> test_pipeop_isomap.R: 2026-02-03 21:31:59.955931: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 21:31:59.982257: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 21:32:00.010521: Classical Scaling
> test_pipeop_isomap.R: 2026-02-03 21:32:00.120279: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-03 21:32:00.120727: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 21:32:00.135498: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 21:32:00.276983: embedding
> test_pipeop_isomap.R: 2026-02-03 21:32:00.309084: DONE
> test_pipeop_isomap.R: 2026-02-03 21:32:00.488507: Isomap START
> test_pipeop_isomap.R: 2026-02-03 21:32:00.488793: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 21:32:00.511175: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 21:32:00.560303: Classical Scaling
> test_pipeop_isomap.R: 2026-02-03 21:32:00.64336: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-03 21:32:00.643803: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 21:32:00.671597: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 21:32:00.774844: embedding
> test_pipeop_isomap.R: 2026-02-03 21:32:00.775966: DONE
> test_pipeop_isomap.R: 2026-02-03 21:32:00.928127: Isomap START
> test_pipeop_isomap.R: 2026-02-03 21:32:00.928989: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 21:32:00.957241: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 21:32:01.006181: Classical Scaling
> test_pipeop_isomap.R: 2026-02-03 21:32:01.085832: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-03 21:32:01.086253: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 21:32:01.133776: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 21:32:01.244647: embedding
> test_pipeop_isomap.R: 2026-02-03 21:32:01.24581: DONE
> test_pipeop_isomap.R: 2026-02-03 21:32:01.379153: Isomap START
> test_pipeop_isomap.R: 2026-02-03 21:32:01.379473: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 21:32:01.400469: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 21:32:01.471856: Classical Scaling
> test_pipeop_isomap.R: 2026-02-03 21:32:01.564711: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-03 21:32:01.565143: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 21:32:01.609418: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 21:32:01.711513: embedding
> test_pipeop_isomap.R: 2026-02-03 21:32:01.712695: DONE
> test_pipeop_isomap.R: 2026-02-03 21:32:01.870019: Isomap START
> test_pipeop_isomap.R: 2026-02-03 21:32:01.870324: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 21:32:01.894258: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 21:32:01.946547: Classical Scaling
> test_pipeop_isomap.R: 2026-02-03 21:32:02.162402: Isomap START
> test_pipeop_isomap.R: 2026-02-03 21:32:02.162696: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 21:32:02.169572: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 21:32:02.217454: Classical Scaling
> test_pipeop_isomap.R: 2026-02-03 21:32:02.267986: Isomap START
> test_pipeop_isomap.R: 2026-02-03 21:32:02.268309: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 21:32:02.294555: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 21:32:02.327205: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_renamecolumns.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running 'testthat.R' [290s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
Saving _problems/test_filter_ensemble-294.R
Saving _problems/test_filter_ensemble-307.R
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-02-02 18:20:45.64582: Isomap START
> test_pipeop_isomap.R: 2026-02-02 18:20:45.646715: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 18:20:45.666308: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 18:20:45.69165: Classical Scaling
> test_pipeop_isomap.R: 2026-02-02 18:20:45.776208: Isomap START
> test_pipeop_isomap.R: 2026-02-02 18:20:45.776847: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 18:20:45.788593: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 18:20:45.812705: Classical Scaling
> test_pipeop_isomap.R: 2026-02-02 18:20:45.86572: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-02 18:20:45.86682: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 18:20:45.90679: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 18:20:45.953691: embedding
> test_pipeop_isomap.R: 2026-02-02 18:20:45.955383: DONE
> test_pipeop_isomap.R: 2026-02-02 18:20:45.995957: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-02 18:20:45.996575: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 18:20:46.014663: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 18:20:46.064058: embedding
> test_pipeop_isomap.R: 2026-02-02 18:20:46.066533: DONE
> test_pipeop_isomap.R: 2026-02-02 18:20:46.202191: Isomap START
> test_pipeop_isomap.R: 2026-02-02 18:20:46.202831: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 18:20:46.23373: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 18:20:46.351303: Classical Scaling
> test_pipeop_isomap.R: 2026-02-02 18:20:46.409841: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-02 18:20:46.410738: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 18:20:46.462211: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 18:20:46.775262: embedding
> test_pipeop_isomap.R: 2026-02-02 18:20:46.781839: DONE
> test_pipeop_isomap.R: 2026-02-02 18:20:47.01977: Isomap START
> test_pipeop_isomap.R: 2026-02-02 18:20:47.020393: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 18:20:47.030535: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 18:20:47.052698: Classical Scaling
> test_pipeop_isomap.R: 2026-02-02 18:20:47.10506: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-02 18:20:47.105922: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 18:20:47.145216: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 18:20:47.195401: embedding
> test_pipeop_isomap.R: 2026-02-02 18:20:47.19721: DONE
> test_pipeop_isomap.R: 2026-02-02 18:20:47.408832: Isomap START
> test_pipeop_isomap.R: 2026-02-02 18:20:47.409563: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 18:20:47.420283: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 18:20:47.435212: Classical Scaling
> test_pipeop_isomap.R: 2026-02-02 18:20:47.498841: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-02 18:20:47.499476: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 18:20:47.531241: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 18:20:47.568698: embedding
> test_pipeop_isomap.R: 2026-02-02 18:20:47.569869: DONE
> test_pipeop_isomap.R: 2026-02-02 18:20:47.674924: Isomap START
> test_pipeop_isomap.R: 2026-02-02 18:20:47.67566: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 18:20:47.686429: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 18:20:47.708877: Classical Scaling
> test_pipeop_isomap.R: 2026-02-02 18:20:47.79501: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-02 18:20:47.796005: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 18:20:47.820068: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 18:20:47.873638: embedding
> test_pipeop_isomap.R: 2026-02-02 18:20:48.35774: DONE
> test_pipeop_isomap.R: 2026-02-02 18:20:48.493555: Isomap START
> test_pipeop_isomap.R: 2026-02-02 18:20:48.494069: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 18:20:48.501242: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 18:20:48.516649: Classical Scaling
> test_pipeop_isomap.R: 2026-02-02 18:20:48.577365: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-02 18:20:48.578101: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 18:20:48.595811: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 18:20:48.64719: embedding
> test_pipeop_isomap.R: 2026-02-02 18:20:48.648827: DONE
> test_pipeop_isomap.R: 2026-02-02 18:20:48.779485: Isomap START
> test_pipeop_isomap.R: 2026-02-02 18:20:48.780222: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 18:20:48.792399: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 18:20:48.815085: Classical Scaling
> test_pipeop_isomap.R: 2026-02-02 18:20:48.893156: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-02 18:20:48.894027: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 18:20:48.913458: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 18:20:48.970839: embedding
> test_pipeop_isomap.R: 2026-02-02 18:20:48.97284: DONE
> test_pipeop_isomap.R: 2026-02-02 18:20:49.117957: Isomap START
> test_pipeop_isomap.R: 2026-02-02 18:20:49.118582: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 18:20:49.130381: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 18:20:49.153134: Classical Scaling
> test_pipeop_isomap.R: 2026-02-02 18:20:49.263208: Isomap START
> test_pipeop_isomap.R: 2026-02-02 18:20:49.263683: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 18:20:49.272997: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 18:20:49.295783: Classical Scaling
> test_pipeop_isomap.R: 2026-02-02 18:20:49.335262: Isomap START
> test_pipeop_isomap.R: 2026-02-02 18:20:49.335931: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 18:20:49.368668: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 18:20:49.391091: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 8 | WARN 0 | SKIP 99 | PASS 13004 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_multiplicityexply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_scalemaxabs.R:6:3',
'test_pipeop_scalerange.R:7:3', 'test_pipeop_select.R:9:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_filter_ensemble.R:294:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all(is.nan(permutation_filter$scores[task$feature_names]))` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_filter_ensemble.R:307:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all.equal(object, expected, check.environment = FALSE, ...)` to be TRUE.
Differences:
`actual` is a character vector ('Mean relative difference: 0.400645')
`expected` is a logical vector (TRUE)
Backtrace:
▆
1. └─global expect_equal(combined_scores, variance_scores * weights[["variance"]]) at test_filter_ensemble.R:307:3
2. └─testthat::expect_true(...)
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 8 | WARN 0 | SKIP 99 | PASS 13004 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13