CRAN Package Check Results for Maintainer ‘Matineh Rahmatbakhsh <matinerb.94 at gmail.com>’

Last updated on 2026-02-04 04:50:46 CET.

Package	ERROR	OK
MSiP	3	10

Package MSiP

Current CRAN status: ERROR: 3, OK: 10

Version: 1.3.7
Check: examples
Result: ERROR Running examples in ‘MSiP-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: Weighted.matrixModel > ### Title: Weighted.matrixModel > ### Aliases: Weighted.matrixModel > > ### ** Examples > > data(SampleDatInput) > datScoring <- Weighted.matrixModel(SampleDatInput) Error: ! `summarise_each()` was deprecated in dplyr 0.7.0 and is now defunct. ℹ Please use `across()` instead. Backtrace: ▆ 1. ├─MSiP::Weighted.matrixModel(SampleDatInput) 2. │ └─... %>% dplyr::select(-1) 3. ├─dplyr::select(., -1) 4. ├─base (local) set_rownames(., .$Experiment.id) 5. │ └─base::is.data.frame(x) 6. ├─base::as.data.frame(.) 7. └─dplyr::summarise_each(., funs(max(.))) 8. └─dplyr:::each_defunct("summarise_each()") 9. └─lifecycle::deprecate_stop(when = "0.7.0", what = fun, with = "across()") 10. └─lifecycle:::deprecate_stop0(msg) 11. └─rlang::cnd_signal(...) Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.3.7
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘MSiP_tutorial.Rmd’ using knitr Quitting from MSiP_tutorial.Rmd:45-49 [unnamed-chunk-4] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/lifecycle_error_deprecated> Error: ! `summarise_each()` was deprecated in dplyr 0.7.0 and is now defunct. ℹ Please use `across()` instead. --- Backtrace: ▆ 1. ├─MSiP::diceCoefficient(SampleDatInput) 2. │ ├─base::suppressWarnings(...) 3. │ │ └─base::withCallingHandlers(...) 4. │ └─... %>% dplyr::select(-1) 5. ├─dplyr::select(., -1) 6. └─dplyr::summarise_each(., funs(max(.))) 7. └─dplyr:::each_defunct("summarise_each()") 8. └─lifecycle::deprecate_stop(when = "0.7.0", what = fun, with = "across()") 9. └─lifecycle:::deprecate_stop0(msg) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'MSiP_tutorial.Rmd' failed with diagnostics: `summarise_each()` was deprecated in dplyr 0.7.0 and is now defunct. ℹ Please use `across()` instead. --- failed re-building ‘MSiP_tutorial.Rmd’ SUMMARY: processing the following file failed: ‘MSiP_tutorial.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.3.7
Check: dependencies in R code
Result: NOTE Namespace in Imports field not imported from: ‘ranger’ All declared Imports should be used. Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.3.7
Check: examples
Result: ERROR Running examples in ‘MSiP-Ex.R’ failed The error most likely occurred in: > ### Name: Weighted.matrixModel > ### Title: Weighted.matrixModel > ### Aliases: Weighted.matrixModel > > ### ** Examples > > data(SampleDatInput) > datScoring <- Weighted.matrixModel(SampleDatInput) Error: ! `summarise_each()` was deprecated in dplyr 0.7.0 and is now defunct. ℹ Please use `across()` instead. Backtrace: ▆ 1. ├─MSiP::Weighted.matrixModel(SampleDatInput) 2. │ └─... %>% dplyr::select(-1) 3. ├─dplyr::select(., -1) 4. ├─base (local) set_rownames(., .$Experiment.id) 5. │ └─base::is.data.frame(x) 6. ├─base::as.data.frame(.) 7. └─dplyr::summarise_each(., funs(max(.))) 8. └─dplyr:::each_defunct("summarise_each()") 9. └─lifecycle::deprecate_stop(when = "0.7.0", what = fun, with = "across()") 10. └─lifecycle:::deprecate_stop0(msg) 11. └─rlang::cnd_signal(...) Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.3.7
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘MSiP_tutorial.Rmd’ using knitr Quitting from MSiP_tutorial.Rmd:45-49 [unnamed-chunk-4] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/lifecycle_error_deprecated> Error: ! `summarise_each()` was deprecated in dplyr 0.7.0 and is now defunct. ℹ Please use `across()` instead. --- Backtrace: ▆ 1. ├─MSiP::diceCoefficient(SampleDatInput) 2. │ ├─base::suppressWarnings(...) 3. │ │ └─base::withCallingHandlers(...) 4. │ └─... %>% dplyr::select(-1) 5. ├─dplyr::select(., -1) 6. └─dplyr::summarise_each(., funs(max(.))) 7. └─dplyr:::each_defunct("summarise_each()") 8. └─lifecycle::deprecate_stop(when = "0.7.0", what = fun, with = "across()") 9. └─lifecycle:::deprecate_stop0(msg) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'MSiP_tutorial.Rmd' failed with diagnostics: `summarise_each()` was deprecated in dplyr 0.7.0 and is now defunct. ℹ Please use `across()` instead. --- failed re-building ‘MSiP_tutorial.Rmd’ SUMMARY: processing the following file failed: ‘MSiP_tutorial.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc