CRAN Package Check Results for Maintainer ‘Lore Merdrignac <l.merdrignac at epiconcept.fr>’

Last updated on 2026-02-04 04:50:44 CET.

Package	ERROR	OK
EpiReport		13
EpiSignalDetection	3	10
EpiStats		13

Package EpiReport

Current CRAN status: OK: 13

Package EpiSignalDetection

Current CRAN status: ERROR: 3, OK: 10

Version: 0.1.2
Check: examples
Result: ERROR Running examples in ‘EpiSignalDetection-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: aggAtlasExport > ### Title: Aggregate filtered final Atlas export > ### Aliases: aggAtlasExport > > ### ** Examples > > #-- Setting the parameters to run the report for > input <- list( + disease = "Salmonellosis", + country = "EU-EEA - complete series", + indicator = "Reported cases", + stratification = "Confirmed cases", + unit = "Month", + daterange = c("2010-01-01", "2016-12-31"), + algo = "FarringtonFlexible", + testingperiod = 5 + ) > > #-- Example dataset > dataset <- EpiSignalDetection::SignalData > > #-- Filtering on declared input parameters > dataset <- filterAtlasExport(dataset, input) > > #-- Aggregating the data by geographical level and time point > dataset <- aggAtlasExport(dataset, input) Error: ! `group_by_()` was deprecated in dplyr 0.7.0 and is now defunct. ℹ Please use `group_by()` instead. ℹ See vignette('programming') for more help Backtrace: ▆ 1. └─EpiSignalDetection::aggAtlasExport(dataset, input) 2. └─dplyr::group_by_(x, c("StudyPeriod")) 3. └─dplyr:::lazy_defunct("group_by") 4. └─lifecycle::deprecate_stop(...) 5. └─lifecycle:::deprecate_stop0(msg) 6. └─rlang::cnd_signal(...) Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.1.2
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘EpiSignalDetection_Vignette.Rmd’ using rmarkdown Quitting from EpiSignalDetection_Vignette.Rmd:179-191 [unnamed-chunk-4] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/lifecycle_error_deprecated> Error: ! `group_by_()` was deprecated in dplyr 0.7.0 and is now defunct. ℹ Please use `group_by()` instead. ℹ See vignette('programming') for more help --- Backtrace: ▆ 1. └─dplyr::group_by_(my_dataset, c("Population")) 2. └─dplyr:::lazy_defunct("group_by") 3. └─lifecycle::deprecate_stop(...) 4. └─lifecycle:::deprecate_stop0(msg) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'EpiSignalDetection_Vignette.Rmd' failed with diagnostics: `group_by_()` was deprecated in dplyr 0.7.0 and is now defunct. ℹ Please use `group_by()` instead. ℹ See vignette('programming') for more help --- failed re-building ‘EpiSignalDetection_Vignette.Rmd’ SUMMARY: processing the following file failed: ‘EpiSignalDetection_Vignette.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.1.2
Check: examples
Result: ERROR Running examples in ‘EpiSignalDetection-Ex.R’ failed The error most likely occurred in: > ### Name: aggAtlasExport > ### Title: Aggregate filtered final Atlas export > ### Aliases: aggAtlasExport > > ### ** Examples > > #-- Setting the parameters to run the report for > input <- list( + disease = "Salmonellosis", + country = "EU-EEA - complete series", + indicator = "Reported cases", + stratification = "Confirmed cases", + unit = "Month", + daterange = c("2010-01-01", "2016-12-31"), + algo = "FarringtonFlexible", + testingperiod = 5 + ) > > #-- Example dataset > dataset <- EpiSignalDetection::SignalData > > #-- Filtering on declared input parameters > dataset <- filterAtlasExport(dataset, input) > > #-- Aggregating the data by geographical level and time point > dataset <- aggAtlasExport(dataset, input) Error: ! `group_by_()` was deprecated in dplyr 0.7.0 and is now defunct. ℹ Please use `group_by()` instead. ℹ See vignette('programming') for more help Backtrace: ▆ 1. └─EpiSignalDetection::aggAtlasExport(dataset, input) 2. └─dplyr::group_by_(x, c("StudyPeriod")) 3. └─dplyr:::lazy_defunct("group_by") 4. └─lifecycle::deprecate_stop(...) 5. └─lifecycle:::deprecate_stop0(msg) 6. └─rlang::cnd_signal(...) Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.1.2
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘EpiSignalDetection_Vignette.Rmd’ using rmarkdown Quitting from EpiSignalDetection_Vignette.Rmd:179-191 [unnamed-chunk-4] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/lifecycle_error_deprecated> Error: ! `group_by_()` was deprecated in dplyr 0.7.0 and is now defunct. ℹ Please use `group_by()` instead. ℹ See vignette('programming') for more help --- Backtrace: ▆ 1. └─dplyr::group_by_(my_dataset, c("Population")) 2. └─dplyr:::lazy_defunct("group_by") 3. └─lifecycle::deprecate_stop(...) 4. └─lifecycle:::deprecate_stop0(msg) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'EpiSignalDetection_Vignette.Rmd' failed with diagnostics: `group_by_()` was deprecated in dplyr 0.7.0 and is now defunct. ℹ Please use `group_by()` instead. ℹ See vignette('programming') for more help --- failed re-building ‘EpiSignalDetection_Vignette.Rmd’ SUMMARY: processing the following file failed: ‘EpiSignalDetection_Vignette.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Package EpiStats

Current CRAN status: OK: 13