CRAN Package Check Results for Maintainer ‘Julien Böhm <julien.boehm at uni-rostock.de>’

Last updated on 2026-02-05 03:50:23 CET.

Package	ERROR	OK
pam	1	12

Package pam

Current CRAN status: ERROR: 1, OK: 12

Version: 2.0.0
Check: tests
Result: ERROR Running 'testthat.R' [47s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(pam) > > test_check("pam") v Created directory: 'results'. eilers peeters: failed to calculate pm: warning: simpleWarning in sqrt(a * c): NaNs produced eilers peeters: failed to calculate ik: warning: simpleWarning in sqrt(a * c): NaNs produced eilers peeters: failed to calculate im: warning: simpleWarning in sqrt(c/a): NaNs produced eilers peeters: failed to calculate w: warning: simpleWarning in sqrt(a * c): NaNs produced platt: failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced eilers peeters: failed to calculate pm: warning: simpleWarning in sqrt(a * c): NaNs produced eilers peeters: failed to calculate ik: warning: simpleWarning in sqrt(a * c): NaNs produced eilers peeters: failed to calculate im: warning: simpleWarning in sqrt(c/a): NaNs produced eilers peeters: failed to calculate w: warning: simpleWarning in sqrt(a * c): NaNs produced platt: failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced platt: failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced skipped file: 20231123_07.csv because of error: Error in doTryCatch(return(expr), name, parentenv, handler): failed to calculate residual_sum_of_squares with eilers_peeters platt: failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced skipped file: 20231214_09.csv because of error: Error in doTryCatch(return(expr), name, parentenv, handler): failed to calculate residual_sum_of_squares with eilers_peeters skipped file: 20231214_10.csv because of error: Error in doTryCatch(return(expr), name, parentenv, handler): failed to calculate residual_sum_of_squares with eilers_peeters eilers peeters: failed to calculate pm: warning: simpleWarning in sqrt(a * c): NaNs produced eilers peeters: failed to calculate ik: warning: simpleWarning in sqrt(a * c): NaNs produced eilers peeters: failed to calculate im: warning: simpleWarning in sqrt(c/a): NaNs produced eilers peeters: failed to calculate w: warning: simpleWarning in sqrt(a * c): NaNs produced platt: failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced skipped file: 20231214_13.csv because of error: Error in doTryCatch(return(expr), name, parentenv, handler): failed to calculate residual_sum_of_squares with eilers_peeters eilers peeters: failed to calculate pm: warning: simpleWarning in sqrt(a * c): NaNs produced eilers peeters: failed to calculate ik: warning: simpleWarning in sqrt(a * c): NaNs produced eilers peeters: failed to calculate im: warning: simpleWarning in sqrt(c/a): NaNs produced eilers peeters: failed to calculate w: warning: simpleWarning in sqrt(a * c): NaNs produced platt: failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced eilers peeters: failed to calculate pm: warning: simpleWarning in sqrt(a * c): NaNs produced eilers peeters: failed to calculate ik: warning: simpleWarning in sqrt(a * c): NaNs produced eilers peeters: failed to calculate im: warning: simpleWarning in sqrt(c/a): NaNs produced eilers peeters: failed to calculate w: warning: simpleWarning in sqrt(a * c): NaNs produced platt: failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced platt: failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced skipped file: 20231214_12.csv because of error: Error in value[[3L]](cond): error while calculating vollenweider model: Error in nlsModel(formula, mf, start, wts): singular gradient matrix at initial parameter estimates skipped file: 20231214_15.csv because of error: Error in value[[3L]](cond): error while calculating vollenweider model: Error in nlsModel(formula, mf, start, wts): singular gradient matrix at initial parameter estimates Saving _problems/test-compare_regression_models_etr_II-21.R Saving _problems/test-compare_regression_models_etr_II-22.R eilers peeters: failed to calculate pm: warning: simpleWarning in sqrt(a * c): NaNs produced eilers peeters: failed to calculate ik: warning: simpleWarning in sqrt(a * c): NaNs produced eilers peeters: failed to calculate im: warning: simpleWarning in sqrt(c/a): NaNs produced eilers peeters: failed to calculate w: warning: simpleWarning in sqrt(a * c): NaNs produced platt: failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced eilers peeters: failed to calculate pm: warning: simpleWarning in sqrt(a * c): NaNs produced eilers peeters: failed to calculate ik: warning: simpleWarning in sqrt(a * c): NaNs produced eilers peeters: failed to calculate im: warning: simpleWarning in sqrt(c/a): NaNs produced eilers peeters: failed to calculate w: warning: simpleWarning in sqrt(a * c): NaNs produced platt: failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced platt: failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced skipped file: 20231123_07.csv because of error: Error in doTryCatch(return(expr), name, parentenv, handler): failed to calculate residual_sum_of_squares with eilers_peeters platt: failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced skipped file: 20231214_09.csv because of error: Error in doTryCatch(return(expr), name, parentenv, handler): failed to calculate residual_sum_of_squares with eilers_peeters skipped file: 20231214_10.csv because of error: Error in doTryCatch(return(expr), name, parentenv, handler): failed to calculate residual_sum_of_squares with eilers_peeters eilers peeters: failed to calculate pm: warning: simpleWarning in sqrt(a * c): NaNs produced eilers peeters: failed to calculate ik: warning: simpleWarning in sqrt(a * c): NaNs produced eilers peeters: failed to calculate im: warning: simpleWarning in sqrt(c/a): NaNs produced eilers peeters: failed to calculate w: warning: simpleWarning in sqrt(a * c): NaNs produced platt: failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced skipped file: 20231214_13.csv because of error: Error in doTryCatch(return(expr), name, parentenv, handler): failed to calculate residual_sum_of_squares with eilers_peeters eilers peeters: failed to calculate pm: warning: simpleWarning in sqrt(a * c): NaNs produced eilers peeters: failed to calculate ik: warning: simpleWarning in sqrt(a * c): NaNs produced eilers peeters: failed to calculate im: warning: simpleWarning in sqrt(c/a): NaNs produced eilers peeters: failed to calculate w: warning: simpleWarning in sqrt(a * c): NaNs produced platt: failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced eilers peeters: failed to calculate pm: warning: simpleWarning in sqrt(a * c): NaNs produced eilers peeters: failed to calculate ik: warning: simpleWarning in sqrt(a * c): NaNs produced eilers peeters: failed to calculate im: warning: simpleWarning in sqrt(c/a): NaNs produced eilers peeters: failed to calculate w: warning: simpleWarning in sqrt(a * c): NaNs produced platt: failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced platt: failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced skipped file: 20231214_12.csv because of error: Error in value[[3L]](cond): error while calculating vollenweider model: Error in nlsModel(formula, mf, start, wts): singular gradient matrix at initial parameter estimates skipped file: 20231214_15.csv because of error: Error in value[[3L]](cond): error while calculating vollenweider model: Error in nlsModel(formula, mf, start, wts): singular gradient matrix at initial parameter estimates Saving _problems/test-compare_regression_models_total-50.R Saving _problems/test-compare_regression_models_total-51.R [ FAIL 4 | WARN 0 | SKIP 0 | PASS 1073 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-compare_regression_models_etr_II.R:21:5'): compare_regression_models etr II ── Expected `model_points_etr_II[["platt"]]` to equal 20. Differences: `actual`: 19.0 `expected`: 20.0 ── Failure ('test-compare_regression_models_etr_II.R:22:5'): compare_regression_models etr II ── Expected `model_points_etr_II[["vollenweider"]]` to equal 39. Differences: `actual`: 40.0 `expected`: 39.0 ── Failure ('test-compare_regression_models_total.R:50:5'): compare_regression_models etr I + II ── Expected `result[["platt_total"]]` to equal 39. Differences: `actual`: 38.0 `expected`: 39.0 ── Failure ('test-compare_regression_models_total.R:51:5'): compare_regression_models etr I + II ── Expected `result[["vollenweider_total"]]` to equal 72. Differences: `actual`: 73.0 `expected`: 72.0 [ FAIL 4 | WARN 0 | SKIP 0 | PASS 1073 ] Error: ! Test failures. Execution halted Flavor: r-devel-windows-x86_64