Last updated on 2026-02-04 04:50:38 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| CodelistGenerator | 1 | 12 | |
| CohortConstructor | 1 | 12 | |
| IncidencePrevalence | 13 | ||
| OmopOnSpark | 13 | ||
| PhenotypeR | 3 | 2 | 8 |
Current CRAN status: ERROR: 1, OK: 12
Version: 4.0.2
Check: package dependencies
Result: ERROR
Package required and available but unsuitable version: ‘PatientProfiles’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-oldrel-macos-x86_64
Current CRAN status: ERROR: 1, OK: 12
Version: 0.6.1
Check: package dependencies
Result: ERROR
Packages required and available but unsuitable versions:
'PatientProfiles', 'CodelistGenerator'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-oldrel-macos-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: ERROR: 3, NOTE: 2, OK: 8
Version: 0.3.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘CodelistDiagnostics.Rmd’ using rmarkdown
trying URL 'https://cdmconnectordata.blob.core.windows.net/cdmconnector-example-data/synpuf-1k_5.3.zip'
Content type 'application/zip' length 593048982 bytes (565.6 MB)
==================================================
downloaded 565.6 MB
Quitting from CodelistDiagnostics.Rmd:87-89 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlib_error_package_not_found>
Error in `safeFontFamily()`:
! The package "systemfonts" is required.
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'CodelistDiagnostics.Rmd' failed with diagnostics:
The package "systemfonts" is required.
--- failed re-building ‘CodelistDiagnostics.Rmd’
--- re-building ‘CohortDiagnostics.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘CohortDiagnostics.Rmd’
--- re-building ‘DatabaseDiagnostics.Rmd’ using rmarkdown
trying URL 'https://cdmconnectordata.blob.core.windows.net/cdmconnector-example-data/synpuf-1k_5.3.zip'
Content type 'application/zip' length 593048982 bytes (565.6 MB)
==================================================
downloaded 565.6 MB
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘DatabaseDiagnostics.Rmd’
--- re-building ‘PhenotypeDiagnostics.Rmd’ using rmarkdown
trying URL 'https://cdmconnectordata.blob.core.windows.net/cdmconnector-example-data/synpuf-1k_5.3.zip'
Content type 'application/zip' length 593048982 bytes (565.6 MB)
==================================================
downloaded 565.6 MB
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘PhenotypeDiagnostics.Rmd’
--- re-building ‘PhenotypeExpectations.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘PhenotypeExpectations.Rmd’
--- re-building ‘PopulationDiagnostics.Rmd’ using rmarkdown
trying URL 'https://cdmconnectordata.blob.core.windows.net/cdmconnector-example-data/synpuf-1k_5.3.zip'
Content type 'application/zip' length 593048982 bytes (565.6 MB)
==================================================
downloaded 565.6 MB
Quitting from PopulationDiagnostics.Rmd:70-78 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlib_error_package_not_found>
Error in `safeFontFamily()`:
! The package "systemfonts" is required.
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'PopulationDiagnostics.Rmd' failed with diagnostics:
The package "systemfonts" is required.
--- failed re-building ‘PopulationDiagnostics.Rmd’
--- re-building ‘ShinyDiagnostics.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘ShinyDiagnostics.Rmd’
SUMMARY: processing the following files failed:
‘CodelistDiagnostics.Rmd’ ‘PopulationDiagnostics.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.3.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘CodelistDiagnostics.Rmd’ using rmarkdown
trying URL 'https://cdmconnectordata.blob.core.windows.net/cdmconnector-example-data/synpuf-1k_5.3.zip'
Content type 'application/zip' length 593048982 bytes (565.6 MB)
==================================================
downloaded 565.6 MB
Quitting from CodelistDiagnostics.Rmd:87-89 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlib_error_package_not_found>
Error in `safeFontFamily()`:
! The package "systemfonts" is required.
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'CodelistDiagnostics.Rmd' failed with diagnostics:
The package "systemfonts" is required.
--- failed re-building ‘CodelistDiagnostics.Rmd’
--- re-building ‘CohortDiagnostics.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘CohortDiagnostics.Rmd’
--- re-building ‘DatabaseDiagnostics.Rmd’ using rmarkdown
trying URL 'https://cdmconnectordata.blob.core.windows.net/cdmconnector-example-data/synpuf-1k_5.3.zip'
Content type 'application/zip' length 593048982 bytes (565.6 MB)
==================================================
downloaded 565.6 MB
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘DatabaseDiagnostics.Rmd’
--- re-building ‘PhenotypeDiagnostics.Rmd’ using rmarkdown
trying URL 'https://cdmconnectordata.blob.core.windows.net/cdmconnector-example-data/synpuf-1k_5.3.zip'
Content type 'application/zip' length 593048982 bytes (565.6 MB)
==================================================
downloaded 565.6 MB
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘PhenotypeDiagnostics.Rmd’
--- re-building ‘PhenotypeExpectations.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘PhenotypeExpectations.Rmd’
--- re-building ‘PopulationDiagnostics.Rmd’ using rmarkdown
trying URL 'https://cdmconnectordata.blob.core.windows.net/cdmconnector-example-data/synpuf-1k_5.3.zip'
Content type 'application/zip' length 593048982 bytes (565.6 MB)
==================================================
downloaded 565.6 MB
Quitting from PopulationDiagnostics.Rmd:70-78 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlib_error_package_not_found>
Error in `safeFontFamily()`:
! The package "systemfonts" is required.
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'PopulationDiagnostics.Rmd' failed with diagnostics:
The package "systemfonts" is required.
--- failed re-building ‘PopulationDiagnostics.Rmd’
--- re-building ‘ShinyDiagnostics.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘ShinyDiagnostics.Rmd’
SUMMARY: processing the following files failed:
‘CodelistDiagnostics.Rmd’ ‘PopulationDiagnostics.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.3.1
Check: installed package size
Result: NOTE
installed size is 6.2Mb
sub-directories of 1Mb or more:
doc 5.4Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-windows-x86_64
Version: 0.3.1
Check: package dependencies
Result: ERROR
Packages required and available but unsuitable versions:
'CodelistGenerator', 'CohortCharacteristics', 'OmopSketch'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-oldrel-macos-x86_64