Last updated on 2026-02-04 04:50:36 CET.
| Package | ERROR | OK |
|---|---|---|
| ZIBR | 3 | 10 |
Current CRAN status: ERROR: 3, OK: 10
Version: 1.0.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘zibr.Rmd’ using rmarkdown
Quitting from zibr.Rmd:169-286 [unnamed-chunk-11]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/lifecycle_error_deprecated>
Error:
! `add_rownames()` was deprecated in dplyr 1.0.0 and is now defunct.
ℹ Please use `tibble::rownames_to_column()` instead.
---
Backtrace:
▆
1. ├─... %>% as.data.frame()
2. ├─base::as.data.frame(.)
3. ├─dplyr::mutate(., Time.X.Treatment = Time * Treat)
4. ├─dplyr::mutate(...)
5. ├─dplyr::mutate(., Subject = paste("S", Subject, sep = ""))
6. ├─dplyr::select(., Sample, Subject, Time, Response, Treat)
7. ├─dplyr::mutate(...)
8. ├─dplyr::left_join(...)
9. ├─dplyr::select(., Subject)
10. ├─dplyr::filter(., count == 4)
11. ├─dplyr::summarise(., count = n())
12. ├─dplyr::group_by(., Subject)
13. ├─dplyr::select(., Sample, Time, Subject, Response, Treatment.Specific)
14. ├─dplyr::filter(., Treatment.Specific != "PEN")
15. ├─dplyr::left_join(...)
16. ├─dplyr:::left_join.data.frame(...)
17. │ └─dplyr::auto_copy(x, y, copy = copy)
18. │ ├─dplyr::same_src(x, y)
19. │ └─dplyr:::same_src.data.frame(x, y)
20. │ └─base::is.data.frame(y)
21. └─dplyr::add_rownames(sample.info, var = "Sample")
22. └─lifecycle::deprecate_stop("1.0.0", "add_rownames()", "tibble::rownames_to_column()")
23. └─lifecycle:::deprecate_stop0(msg)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'zibr.Rmd' failed with diagnostics:
`add_rownames()` was deprecated in dplyr 1.0.0 and is now defunct.
ℹ Please use `tibble::rownames_to_column()` instead.
--- failed re-building ‘zibr.Rmd’
SUMMARY: processing the following file failed:
‘zibr.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘zibr.Rmd’ using rmarkdown
Quitting from zibr.Rmd:169-286 [unnamed-chunk-11]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/lifecycle_error_deprecated>
Error:
! `add_rownames()` was deprecated in dplyr 1.0.0 and is now defunct.
ℹ Please use `tibble::rownames_to_column()` instead.
---
Backtrace:
▆
1. ├─... %>% as.data.frame()
2. ├─base::as.data.frame(.)
3. ├─dplyr::mutate(., Time.X.Treatment = Time * Treat)
4. ├─dplyr::mutate(...)
5. ├─dplyr::mutate(., Subject = paste("S", Subject, sep = ""))
6. ├─dplyr::select(., Sample, Subject, Time, Response, Treat)
7. ├─dplyr::mutate(...)
8. ├─dplyr::left_join(...)
9. ├─dplyr::select(., Subject)
10. ├─dplyr::filter(., count == 4)
11. ├─dplyr::summarise(., count = n())
12. ├─dplyr::group_by(., Subject)
13. ├─dplyr::select(., Sample, Time, Subject, Response, Treatment.Specific)
14. ├─dplyr::filter(., Treatment.Specific != "PEN")
15. ├─dplyr::left_join(...)
16. ├─dplyr:::left_join.data.frame(...)
17. │ └─dplyr::auto_copy(x, y, copy = copy)
18. │ ├─dplyr::same_src(x, y)
19. │ └─dplyr:::same_src.data.frame(x, y)
20. │ └─base::is.data.frame(y)
21. └─dplyr::add_rownames(sample.info, var = "Sample")
22. └─lifecycle::deprecate_stop("1.0.0", "add_rownames()", "tibble::rownames_to_column()")
23. └─lifecycle:::deprecate_stop0(msg)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'zibr.Rmd' failed with diagnostics:
`add_rownames()` was deprecated in dplyr 1.0.0 and is now defunct.
ℹ Please use `tibble::rownames_to_column()` instead.
--- failed re-building ‘zibr.Rmd’
SUMMARY: processing the following file failed:
‘zibr.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc