* using log directory 'd:/Rcompile/CRANpkg/local/4.5/pkgdiff.Rcheck'
* using R version 4.5.0 (2025-04-11 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'pkgdiff/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'pkgdiff' version '0.2.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'pkgdiff' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [4s] OK
* checking whether the package can be loaded with stated dependencies ... [3s] OK
* checking whether the package can be unloaded cleanly ... [4s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s] OK
* checking loading without being on the library search path ... [3s] OK
* checking whether startup messages can be suppressed ... [3s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [7s] OK
* checking Rd files ... [1s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [15s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [120s] ERROR
  Running 'testthat.R' [120s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(pkgdiff)
  > 
  > test_check("pkgdiff")
  # A difference object: logr package
  - Comparing: v1.3.6/v1.3.7
  - Breaking Changes: FALSE
  - Added Functions: 
    - get_warnings()
    - log_error()
    - log_resume()
    - log_suspend()
  - Added Parameters: 
    - log_close(): footer
    - log_open(): header
  # A difference object: admiral package
  - Comparing: v0.12.3/v1.0.0
  - Breaking Changes: TRUE
  - Added Functions: 
    - derive_var_merged_ef_msrc()
    - derive_vars_computed()
    - derive_vars_extreme_event()
    - flag_event()
  - Added Parameters: 
    - consolidate_metadata(): check_type
    - derive_extreme_event(): tmp_event_nr_var
    - derive_param_exposure(): dataset_add, filter_add
    - derive_summary_records(): dataset_add, dataset_ref, filter_add, missing_values
    - derive_var_anrind(): signif_dig
    - derive_var_extreme_flag(): true_value, false_value
    - derive_var_joined_exist_flag(): dataset_add, first_cond_lower, first_cond_upper, filter_add, filter_join
    - derive_var_merged_summary(): new_vars, missing_values
    - derive_vars_joined(): tmp_obs_nr_var, join_type, first_cond_lower, first_cond_upper, exist_flag, true_value, false_value
    - derive_vars_merged(): exist_flag, true_value, false_value
    - event_joined(): first_cond_lower, first_cond_upper
    - filter_joined(): dataset_add, first_cond_lower, first_cond_upper, filter_add, filter_join
    - set_admiral_options(): signif_digits
  - Removed Functions: 
    - assert_terms()
    - assert_valid_queries()
    - derive_param_extreme_event()
    - derive_var_basetype()
    - derive_var_confirmation_flag()
    - derive_var_last_dose_amt()
    - derive_var_last_dose_date()
    - derive_var_last_dose_grp()
    - derive_var_merged_cat()
    - derive_var_merged_character()
    - derive_vars_last_dose()
    - extend_source_datasets()
    - filter_date_sources()
    - validate_basket_select()
    - validate_query()
  - Removed Parameters: 
    - derive_extreme_records(): filter
    - derive_param_exist_flag(): aval_fun, dataset_adsl, subject_keys
  Package data for 'logxx' not found.
  Package data for 'logxx' not found.
  Archive versions of 'logxx' not available.
  # A difference object: fmtr package
  - Comparing: v1.5.7/v1.5.8
  - Breaking Changes: TRUE
  - Added Functions: 
    - fapply2()
  - Added Parameters: 
    - fmt_cnt_pct(): na, zero
  - Removed Functions: 
    - labels.data.frame()
    - labels<-()
  # A difference object: fmtr package
  - Comparing: v1.5.7/v1.5.8
  - Breaking Changes: TRUE
  - Added Functions: 1
  - Added Parameters: 1
  - Removed Functions: 
    - labels.data.frame()
    - labels<-()
  # A difference object: fmtr package
  - Comparing: v1.5.5/v1.5.7
  - Breaking Changes: FALSE
  # A difference object: fmtr package
  - Comparing: v1.5.5/v1.5.7
  - Breaking Changes: FALSE
  Archive versions of 'ards' not available.
  Loading required package: proto
  Loading required package: grid
  Loading required package: reshape
  Loading required package: proto
  Loading required package: reshape
  # A package info object: Matrix package
  - Version: v1.7-3
  - Release Date: 2025-04-11
  - Title: Sparse and Dense Matrix Classes and Methods
  - Maintainer: Martin Maechler <mmaechler+Matrix@gmail.com>
  - License: GPL (>= 2) | file LICENCE
  - Description: A rich hierarchy of sparse and dense matrix classes,
  including general, symmetric, triangular, and diagonal matrices
  with numeric, logical, or pattern entries.  Efficient methods for
  operating on such matrices, often wrapping the 'BLAS', 'LAPACK',
  and 'SuiteSparse' libraries.
  - Downloads/Month: 107603
  - Cached: FALSE
  - Base Package: TRUE
  Package R.oo version 1.4.2 has no namespace file.
  # A package info object: R.oo package
  - Version: v1.4.2
  - Release Date: 
  - Title: R object-oriented programming with or without references
  - Maintainer: Henrik Bengtsson <henrikb@braju.com>
  - License: LGPL (>= 2.1)
  - Description: Methods and classes for object-oriented programming in R with or without references.  Large effort has been made on making definition of methods as simple as possible with a minimum of maintainance for package developers.  The package has been developed since 2001 and is now considered very stable.  This is a cross-platform package implemented in pure R that defines standard S3 classes without any tricks.
  - Depends: R (>= 2.2.0), R.methodsS3, utils
  - Imports: methods
  - Suggests: tools
  - Downloads/Month: 218572
  - Repository: 
  - Cached: TRUE
  - Functions: 
    - .First.lib(): libname, pkgname
  Package xtable version 1.0-1 has no namespace file.
  # A package info object: xtable package
  - Version: v1.0-1
  - Release Date: 
  - Title: Export tables
  - License: GPL version 2 or later
  - Description: Coerce data to LaTeX and HTML tables
  - Depends: 
  - Downloads/Month: 465791
  - Cached: TRUE
  - Functions: 
    - caption(): x, ...
    - caption.xtable(): x
    - label(): x, ...
    - label.xtable(): x
    - align(): x, ...
    - align.xtable(): x
    - digits(): x, ...
    - digits.xtable(): x
    - display(): x, ...
    - display.xtable(): x
    - xtable(): x, ...
    - xtable.data.frame(): x, caption, label, align, digits, display
    - xtable.matrix(): x, caption, label, align, digits, display
    - xtable.anova(): x, caption, label, align, digits, display
    - xtable.aov(): x, caption, label, align, digits, display, ...
    - xtable.summary.aov(): x, caption, label, align, digits, display
    - xtable.aovlist(): x, caption, label, align, digits, display
    - xtable.summary.aovlist(): x, caption, label, align, digits, display
    - xtable.lm(): x, caption, label, align, digits, display
    - xtable.summary.lm(): x, caption, label, align, digits, display
    - xtable.glm(): x, caption, label, align, digits, display
    - xtable.summary.glm(): x, caption, label, align, digits, display
    - xtable.prcomp(): x, caption, label, align, digits, display
    - xtable.summary.prcomp(): x, caption, label, align, digits, display
    - xtable.princomp(): x, caption, label, align, digits, display
  # A package info object: gtools package
  - Version: v2.0.7
  - Release Date: 
  - Title: Various functions to help manipulate data.
  - Maintainer: Nitin Jain <nitin.jain@pfizer.com>
  - License: GPL (version 2 or later)
  - Description: Various functions to help manipulate data
  - Depends: R (>= 1.9.0)
  - Downloads/Month: 181186
  - Cached: TRUE
  - Functions: 
    - combinations(): n, r, v, set, repeats.allowed
    - ddirichlet(): x, alpha
    - even(): x
    - foldchange(): num, denom
    - foldchange2logratio(): foldchange, base
    - inv.logit(): x, min, max
    - invalid(): x
    - logit(): x, min, max
    - logratio2foldchange(): logratio, base
    - mixedorder()
    - mixedsort()
    - odd(): x
    - permutations(): n, r, v, set, repeats.allowed
    - permute(): x
    - quantcut(): x, q, na.rm, ...
    - rdirichlet(): n, alpha
    - running()
    - scat(): ...
  # A package info object: logr package
  - Version: v1.3.9
  - Release Date: 2025-03-26
  - Title: Creates Log Files
  - Maintainer: David Bosak <dbosak01@gmail.com>
  - License: CC0
  - Description: Contains functions to help create log files.  The
  package aims to overcome the difficulty of the base R sink() command.  The
  log_print() function will print to both the console and the file log,
  without interfering in other write operations.
  - Depends: R (>= 3.4.0), common (>= 1.1.3)
  - Imports: withr, utils
  - Suggests: knitr, rmarkdown, testthat, tidylog, dplyr, covr
  - Downloads/Month: 5033
  - Repository: CRAN
  - Cached: TRUE
  - Functions: 15
  # A package info object: logr package
  - Version: v1.3.9
  - Release Date: 2025-03-26
  - Title: Creates Log Files
  - Maintainer: David Bosak <dbosak01@gmail.com>
  - License: CC0
  - Description: Contains functions to help create log files.  The
  package aims to overcome the difficulty of the base R sink() command.  The
  log_print() function will print to both the console and the file log,
  without interfering in other write operations.
  - Depends: R (>= 3.4.0), common (>= 1.1.3)
  - Imports: withr, utils
  - Suggests: knitr, rmarkdown, testthat, tidylog, dplyr, covr
  - Downloads/Month: 5033
  - Repository: CRAN
  - Cached: TRUE
  - Functions: 
    - get_warnings()
    - log_close(): footer
    - log_code()
    - log_error(): msg
    - log_hook(): x
    - log_info(): msg, console, blank_after, hide_notes
    - log_open(): file_name, logdir, show_notes, autolog, compact, traceback, header, stdout, line_size
    - log_path()
    - log_print(): x, ..., console, blank_after, msg, hide_notes
    - log_resume(): file_name
    - log_status()
    - log_suspend()
    - log_warning(): msg
    - put(): x, ..., console, blank_after, msg, hide_notes
    - sep(): x, console
  Getting stability score for package 'tcltk'...
  Package 'tcltk' is a Base package.
  Getting stability score for package 'Matrix'...
  Package 'Matrix' is a Base package.
  Comparing knitr v1.39/v1.50
  Comparing rvest v0.3.6/v1.0.4
  Getting stability score for package 'common'...
  Getting stability score for package 'fmtr'...
  Getting stability score for package 'libr'...
  Getting stability score for package 'defineR'...
  Package data for 'definer' not found.
  Archive versions of 'definer' not available.
  Comparing procs 1.0.5/1.0.6
  Comparing procs 1.0.4/1.0.5
  Comparing procs 1.0.3/1.0.4
  Package data for 'forker' not found.
  Archive versions of 'forker' not available.
  Package 'tcltk' is a Base package.
  Package 'Matrix' is a Base package.
  Package data for 'grid' has been archived.
  Package data for 'purr' not found.
  Archive versions of 'definrr' not available.
  Archive versions of 'defineR' not available.
  Package data for 'forker' not found.
  Archive versions of 'forker' not available.
  [ FAIL 1 | WARN 1 | SKIP 0 | PASS 253 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-pkginfo.R:209:3'): info8: pkg_info() handles archived packages. ──
  Error in `load(gzcon(murl))`: cannot open the connection to 'https://github.com/dbosak01/pkgdiffdata/raw/refs/heads/main/packages.rds'
  Backtrace:
      ▆
   1. └─pkgdiff::pkg_info("grid") at test-pkginfo.R:209:3
   2.   └─pkgdiff:::github_packages(pkg)
   3.     ├─base::get(load(gzcon(murl)))
   4.     └─base::load(gzcon(murl))
  
  [ FAIL 1 | WARN 1 | SKIP 0 | PASS 253 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [10s] OK
* checking PDF version of manual ... [22s] OK
* checking HTML version of manual ... [3s] OK
* DONE
Status: 1 ERROR