* using log directory 'd:/Rcompile/CRANpkg/local/4.4/gadget3.Rcheck'
* using R version 4.4.3 (2025-02-28 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.3.0
    GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'gadget3/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'gadget3' version '0.13-0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'gadget3' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s] OK
* checking whether the package can be unloaded cleanly ... [0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s] OK
* checking whether the namespace can be unloaded cleanly ... [1s] OK
* checking loading without being on the library search path ... [0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [23s] OK
* checking Rd files ... [2s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [36s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [220s] ERROR
  Running 'test-aab_env.R' [1s]
  Running 'test-action_age.R' [4s]
  Running 'test-action_grow-methods.R' [6s]
  Running 'test-action_grow.R' [3s]
  Running 'test-action_mature.R' [3s]
  Running 'test-action_migrate.R' [3s]
  Running 'test-action_naturalmortality.R' [1s]
  Running 'test-action_predate-catchability.R' [6s]
  Running 'test-action_predate-numberfleet.R' [3s]
  Running 'test-action_predate-predator.R' [19s]
  Running 'test-action_predate-timebasedsuitability.R' [4s]
  Running 'test-action_predate.R' [8s]
  Running 'test-action_renewal-otherfood.R' [10s]
  Running 'test-action_renewal.R' [6s]
  Running 'test-action_report.R' [2s]
  Running 'test-action_spawn-multipleoutputs.R' [6s]
  Running 'test-action_spawn.R' [6s]
  Running 'test-action_spmodel.R' [2s]
  Running 'test-action_tagging.R' [3s]
  Running 'test-action_time.R' [2s]
  Running 'test-action_weightloss.R' [3s]
  Running 'test-array_utils.R' [4s]
  Running 'test-env_dif.R' [2s]
  Running 'test-eval.R' [1s]
  Running 'test-formula_utils.R' [1s]
  Running 'test-init_val.R' [2s]
  Running 'test-likelihood_bounds.R' [3s]
  Running 'test-likelihood_data.R' [5s]
  Running 'test-likelihood_distribution-surveyindices.R' [3s]
  Running 'test-likelihood_distribution.R' [18s]
  Running 'test-likelihood_random.R' [1s]
  Running 'test-likelihood_sparsesample.R' [5s]
  Running 'test-likelihood_tagging_ckmr.R' [5s]
  Running 'test-likelihood_understocking.R' [0s]
  Running 'test-param_project-ar1.R' [5s]
  Running 'test-param_project-logar1.R' [4s]
  Running 'test-param_project.R' [2s]
  Running 'test-params.R' [3s]
  Running 'test-quota-assess.R' [7s]
  Running 'test-quota-hockeyfleet.R' [5s]
  Running 'test-quota.R' [2s]
  Running 'test-regression.R' [1s]
  Running 'test-run.R' [1s]
  Running 'test-run_r.R' [3s]
  Running 'test-run_tmb-reporting_enabled.R' [1s]
  Running 'test-run_tmb.R' [5s]
  Running 'test-step.R' [3s]
  Running 'test-stock.R' [1s]
  Running 'test-stock_age.R' [2s]
  Running 'test-stock_areas.R' [3s]
  Running 'test-stock_product.R' [0s]
  Running 'test-stock_tag.R' [2s]
  Running 'test-stock_time-fishingyear.R' [2s]
  Running 'test-stock_time.R' [1s]
  Running 'test-suitability-report.R' [9s]
  Running 'test-suitability.R' [3s]
  Running 'test-timedata.R' [2s]
  Running 'test-timevariable.R' [1s]
Running the tests in 'tests/test-env_dif.R' failed.
Complete output:
  > library(unittest)
  > 
  > library(gadget3)
  > 
  > params <- list()
  > actions <- list()
  > 
  > # NB: Should test under both CppAD and TMBAD
  > # options(gadget3.tmb.framework = "CppAD")
  > 
  > ###############################################################################
  > 
  > dif_pmax_scl_dbl_in <- runif(1, 0, 100)
  > dif_pmax_vec_in <- runif(10, 0, 100)
  > dif_pmax_vec_vec_max <- runif(10, 0, 10) * 10
  > actions[['dif_pmax_vec']] <- g3_formula(
  +     {
  +         expect_dif_pmax_scl_dbl <- dif_pmax(dif_pmax_scl_dbl_in, 40.0, 1e5)
  +         expect_dif_pmax_vec_typ <- dif_pmax(dif_pmax_vec_in, dif_pmax_vec_typ_max, 1e5)
  +         expect_dif_pmax_dervec_typ <- dif_pmax(dif_pmax_vec_in * 2, dif_pmax_vec_typ_max, 1e5)
  +         expect_dif_pmax_vec_dbl <- dif_pmax(dif_pmax_vec_in, 30.0, 1e5)
  +         expect_dif_pmax_vec_int <- dif_pmax(dif_pmax_vec_in, dif_pmax_vec_int_max, 1e5)
  +         expect_dif_pmax_vec_vec <- dif_pmax(dif_pmax_vec_in, dif_pmax_vec_vec_max, 1e5)
  +     },
  +     dif_pmax_scl_dbl_in = dif_pmax_scl_dbl_in,
  +     dif_pmax_vec_in = dif_pmax_vec_in,
  +     dif_pmax_vec_typ_max = 40.0,
  +     dif_pmax_vec_int_max = 60L,
  +     dif_pmax_vec_vec_max = dif_pmax_vec_vec_max,
  +     expect_dif_pmax_scl_dbl = pmax(dif_pmax_scl_dbl_in, 40),
  +     expect_dif_pmax_vec_typ = pmax(dif_pmax_vec_in, 40.0),
  +     expect_dif_pmax_dervec_typ = pmax(dif_pmax_vec_in * 2, 40.0),
  +     expect_dif_pmax_vec_dbl = pmax(dif_pmax_vec_in, 30.0),
  +     expect_dif_pmax_vec_int = pmax(dif_pmax_vec_in, 60L),
  +     expect_dif_pmax_vec_vec = pmax(dif_pmax_vec_in, dif_pmax_vec_vec_max),
  +     end = NULL )
  > 
  > dif_pmax_arr_in <- array(runif(10, 0, 9), dim = c(3, 3))
  > dif_pmax_arr_vec_max <- runif(3, 0, 10) * 10
  > actions[['dif_pmax_arr']] <- g3_formula(
  +     {
  +         expect_dif_pmax_arr_typ <- dif_pmax(dif_pmax_arr_in, dif_pmax_arr_typ_max, 1e5)
  +         expect_dif_pmax_dearr_typ <- dif_pmax(dif_pmax_arr_in * 2, dif_pmax_arr_typ_max, 1e5)
  +         expect_dif_pmax_arr_dbl <- dif_pmax(dif_pmax_arr_in, 30.0, 1e5)
  +         expect_dif_pmax_arr_int <- dif_pmax(dif_pmax_arr_in, dif_pmax_arr_int_max, 1e5)
  +         expect_dif_pmax_arr_vec <- dif_pmax(dif_pmax_arr_in, dif_pmax_arr_vec_max, 1e5)
  +     },
  +     dif_pmax_arr_in = dif_pmax_arr_in,
  +     dif_pmax_arr_typ_max = 40.0,
  +     dif_pmax_arr_int_max = 60L,
  +     dif_pmax_arr_vec_max = dif_pmax_arr_vec_max,
  +     expect_dif_pmax_arr_typ = pmax(dif_pmax_arr_in, 40.0),
  +     expect_dif_pmax_dearr_typ = pmax(dif_pmax_arr_in * 2, 40.0),
  +     expect_dif_pmax_arr_dbl = pmax(dif_pmax_arr_in, 30.0),
  +     expect_dif_pmax_arr_int = pmax(dif_pmax_arr_in, 60L),
  +     expect_dif_pmax_arr_vec = pmax(dif_pmax_arr_in, dif_pmax_arr_vec_max),
  +     end = NULL )
  > 
  > dif_pmin_vec_in <- runif(10, 0, 100)
  > dif_pmin_vec_vec_max <- runif(10, 0, 10) * 10
  > actions[['dif_pmin_vec']] <- g3_formula(
  +     {
  +         expect_dif_pmin_vec_typ <- dif_pmin(dif_pmin_vec_in, dif_pmin_vec_typ_max, 1e5)
  +         expect_dif_pmin_vec_dbl <- dif_pmin(dif_pmin_vec_in, 30.0, 1e5)
  +         expect_dif_pmin_vec_int <- dif_pmin(dif_pmin_vec_in, dif_pmin_vec_int_max, 1e5)
  +         expect_dif_pmin_vec_vec <- dif_pmin(dif_pmin_vec_in, dif_pmin_vec_vec_max, 1e5)
  +     },
  +     dif_pmin_vec_in = dif_pmin_vec_in,
  +     dif_pmin_vec_typ_max = 40.0,
  +     dif_pmin_vec_int_max = 60L,
  +     dif_pmin_vec_vec_max = dif_pmin_vec_vec_max,
  +     expect_dif_pmin_vec_typ = pmin(dif_pmin_vec_in, 40.0),
  +     expect_dif_pmin_vec_dbl = pmin(dif_pmin_vec_in, 30.0),
  +     expect_dif_pmin_vec_int = pmin(dif_pmin_vec_in, 60L),
  +     expect_dif_pmin_vec_vec = pmin(dif_pmin_vec_in, dif_pmin_vec_vec_max),
  +     end = NULL )
  > 
  > dif_pmin_arr_in <- array(runif(10, 0, 9), dim = c(3, 3))
  > dif_pmin_arr_vec_max <- runif(3, 0, 10) * 10
  > actions[['dif_pmin_arr']] <- g3_formula(
  +     {
  +         expect_dif_pmin_arr_typ <- dif_pmin(dif_pmin_arr_in, dif_pmin_arr_typ_max, 1e5)
  +         expect_dif_pmin_arr_dbl <- dif_pmin(dif_pmin_arr_in, 30.0, 1e5)
  +         expect_dif_pmin_arr_int <- dif_pmin(dif_pmin_arr_in, dif_pmin_arr_int_max, 1e5)
  +         expect_dif_pmin_arr_vec <- dif_pmin(dif_pmin_arr_in, dif_pmin_arr_vec_max, 1e5)
  +     },
  +     dif_pmin_arr_in = dif_pmin_arr_in,
  +     dif_pmin_arr_typ_max = 40.0,
  +     dif_pmin_arr_int_max = 60L,
  +     dif_pmin_arr_vec_max = dif_pmin_arr_vec_max,
  +     expect_dif_pmin_arr_typ = pmin(dif_pmin_arr_in, 40.0),
  +     expect_dif_pmin_arr_dbl = pmin(dif_pmin_arr_in, 30.0),
  +     expect_dif_pmin_arr_int = pmin(dif_pmin_arr_in, 60L),
  +     expect_dif_pmin_arr_vec = pmin(dif_pmin_arr_in, dif_pmin_arr_vec_max),
  +     end = NULL )
  > 
  > dif_pminmax_vec_in <- runif(10, 0, 100)
  > dif_pminmax_vec_vec_l <- runif(10, 0, 50)
  > dif_pminmax_vec_vec_u <- 50 + runif(10, 0, 50)
  > actions[['dif_pminmax_vec']] <- g3_formula(
  +     {
  +         expect_dif_pminmax_vec_dbl <- dif_pminmax(dif_pminmax_vec_in, 30.0, 60.0, 1e5)
  +         expect_dif_pminmax_vec_vec <- dif_pminmax(dif_pminmax_vec_in, dif_pminmax_vec_vec_l, dif_pminmax_vec_vec_u, 1e5)
  +     },
  +     dif_pminmax_vec_in = dif_pminmax_vec_in,
  +     dif_pminmax_vec_vec_l = dif_pminmax_vec_vec_l,
  +     dif_pminmax_vec_vec_u = dif_pminmax_vec_vec_u,
  +     expect_dif_pminmax_vec_dbl = pmin(pmax(dif_pminmax_vec_in, 30.0), 60.0),
  +     expect_dif_pminmax_vec_vec = pmin(pmax(dif_pminmax_vec_in, dif_pminmax_vec_vec_l), dif_pminmax_vec_vec_u),
  +     end = NULL )
  > 
  > ###############################################################################
  > 
  > expecteds <- new.env(parent = emptyenv())
  > 
  > for (i in seq_along(actions)) {
  +     exp_names <- grep("^expect_", names(environment(actions[[i]])), value = TRUE)
  + 
  +     # For each expect_ variable, move to expecteds
  +     for (exp_name in exp_names) {
  +         expecteds[[exp_name]] <- environment(actions[[i]])[[exp_name]]
  +         environment(actions[[i]])[[exp_name]][] <- 0
  +     }
  + 
  +     # REPORT every expect_
  +     reports <- lapply(exp_names, function (exp_name) {
  +         substitute(REPORT(sym), list(sym = as.symbol(exp_name)))
  +     })
  +     # Convert list to { REPORT(x) ; REPORT(y); ... }
  +     reports <- as.call(c(as.symbol("{"), reports))
  + 
  +     # Top/tail actions with a comment of their name & reports
  +     actions[[i]] <- gadget3:::f_substitute(quote({
  +         comment(act_name)
  +         act_f
  +         reports
  +     }), list(
  +         act_name = names(actions)[[i]],
  +         act_f = actions[[i]],
  +         reports = reports))
  + }
  > 
  > actions[['z']] <- g3_formula({
  +     comment('done')
  +     nll <- nll + g3_param('rv')
  +     return(nll)
  + }, nll = 0.0)
  > params$rv <- 0.0
  > 
  > model_fn <- g3_to_r(actions)
  > model_cpp <- g3_to_tmb(actions)
  > result <- model_fn(params)
  > 
  > # Compare everything we've been told to compare
  > for (n in ls(expecteds)) {
  +     tol <- sqrt(.Machine$double.eps)
  +     if (!is.null(attr(expecteds[[n]], "tol"))) {
  +         tol <- attr(expecteds[[n]], "tol")
  +         attr(expecteds[[n]], "tol") <- NULL
  +     }
  +     ok(ut_cmp_equal(
  +         attr(result, n),
  +         expecteds[[n]],
  +         tolerance = tol ), n)
  + }
  ok - expect_dif_pmax_arr_dbl
  ok - expect_dif_pmax_arr_int
  ok - expect_dif_pmax_arr_typ
  ok - expect_dif_pmax_arr_vec
  ok - expect_dif_pmax_dearr_typ
  ok - expect_dif_pmax_dervec_typ
  ok - expect_dif_pmax_scl_dbl
  ok - expect_dif_pmax_vec_dbl
  ok - expect_dif_pmax_vec_int
  ok - expect_dif_pmax_vec_typ
  ok - expect_dif_pmax_vec_vec
  ok - expect_dif_pmin_arr_dbl
  ok - expect_dif_pmin_arr_int
  ok - expect_dif_pmin_arr_typ
  ok - expect_dif_pmin_arr_vec
  ok - expect_dif_pmin_vec_dbl
  ok - expect_dif_pmin_vec_int
  ok - expect_dif_pmin_vec_typ
  ok - expect_dif_pmin_vec_vec
  not ok - expect_dif_pminmax_vec_dbl
  # Test returned non-TRUE value:
  # Mean relative difference: 1.577177e-07
  # --- attr(result, n)
  # +++ expecteds[[n]]
  #  num [1:10] 41.95813669 [-30.00000473-]{+30+} 60 60 37.03350888 60 60 30 30 58.40689812
  ok - expect_dif_pminmax_vec_vec
  > 
  > gadget3:::ut_tmb_r_compare2(model_fn, model_cpp, params)
  # skip: not running TMB tests
  NULL
  > 
  > proc.time()
     user  system elapsed 
     0.93    0.10    1.59 
  1..21
  # Looks like you failed 1 of 21 tests.
  # 20: expect_dif_pminmax_vec_dbl
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [74s] OK
* checking PDF version of manual ... [23s] OK
* checking HTML version of manual ... [15s] OK
* DONE
Status: 1 ERROR