* using log directory 'd:/Rcompile/CRANpkg/local/4.5/ggmugs.Rcheck'
* using R Under development (unstable) (2025-02-11 r87713 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.3.0
    GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'ggmugs/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ggmugs' version '0.6.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ggmugs' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
  Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    'ggmugs.R'
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s] OK
* checking whether the package can be unloaded cleanly ... [0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s] OK
* checking loading without being on the library search path ... [0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [2s] OK
* checking Rd files ... [0s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [0s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [62s] ERROR
  Running 'spelling.R' [0s]
  Running 'testthat.R' [61s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(ggmugs)
  > 
  > test_check("ggmugs")
  Loading study1...
  
  [ FAIL 1 | WARN 2 | SKIP 0 | PASS 0 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-ggmugs.R:2:3'): ggmugs works ───────────────────────────────────
  <purrr_error_indexed/rlang_error/error/condition>
  Error in `purrr::map(input_files, function(x) {
      message(paste0("Loading ", x[["study_name"]], "...\n"))
      d = data.table::fread(x[["summary_stat"]])
      d[["study_name"]] = x[["study_name"]]
      d[["chr_pos"]] = paste0(d[["chr"]], "_", d[["pos"]])
      d[["logp"]] = -log(d[["p"]], 10)
      d = dplyr::arrange(d, chr, pos, dplyr::desc(logp))
      d = dplyr::distinct(d, chr_pos, .keep_all = TRUE)
      d = dplyr::select(d, chr, pos, chr_pos, logp, study_name)
      return(d)
  })`: i In index: 1.
  i With name: study1.
  Caused by error in `download.file()`:
  ! download from 'https://raw.githubusercontent.com/Broccolito/ggmugs_data/main/sumstat1.txt' failed
  Backtrace:
       ▆
    1. ├─ggmugs::ggmugs(...) at test-ggmugs.R:2:3
    2. │ └─purrr::map(...)
    3. │   └─purrr:::map_("list", .x, .f, ..., .progress = .progress)
    4. │     ├─purrr:::with_indexed_errors(...)
    5. │     │ └─base::withCallingHandlers(...)
    6. │     ├─purrr:::call_with_cleanup(...)
    7. │     └─ggmugs (local) .f(.x[[i]], ...)
    8. │       └─data.table::fread(x[["summary_stat"]])
    9. │         └─utils::download.file(...)
   10. └─base::.handleSimpleError(...)
   11.   └─purrr (local) h(simpleError(msg, call))
   12.     └─cli::cli_abort(...)
   13.       └─rlang::abort(...)
  
  [ FAIL 1 | WARN 2 | SKIP 0 | PASS 0 ]
  Error: Test failures
  Execution halted
* checking PDF version of manual ... [20s] OK
* checking HTML version of manual ... [0s] OK
* DONE
Status: 1 ERROR, 1 NOTE