# Intensity Analysis of Spatial Point Patterns on Complex Networks

## Documentation for package ‘intensitynet’ version 1.4.0

- DESCRIPTION file
- Package NEWS
- Package README

## Help Pages

ApplyWindow | Retrieve an intensitynet object focused on a given area
ApplyWindow.intensitynet | Retrieve an intensitynet object focused on a given area
AreEventsRelated | Checks if events are related to the intensitynet object
AreEventsRelated.intensitynet | Checks if events are related to the intensitynet object
CalculateDistancesMtx.netTools | Calculates the distances between all pairs of nodes from the given network
dir_intnet_chicago | This data is an intensitynet object containing a directed network. The base data used is from Chicago, extracted from the spatstat package.
EdgeIntensitiesAndProportions.intensitynet | Calculate all the edge intensities of the graph.
EdgeIntensity.intensitynet | Given two nodes, calculates its edge intensity
GeoreferencedGgplot2.netTools | Plot heatmaps of a network
GeoreferencedPlot.netTools | Plot the given network using its node coordinates
GetEventCorrection | Gives the event correction value related to the intensitynet object
GetEventCorrection.intensitynet | Gives the event correction value related to the intensitynet object
GetEvents | Gives the events related to the intensitynet object
GetEvents.intensitynet | Gives the events related to the intensitynet object
GetGraph | Gives the graph related to the intensitynet object
GetGraph.intensitynet | Gives the graph related to the intensitynet object
GetGraphType | Gives the type of graph related to the intensitynet object
GetGraphType.intensitynet | Gives the type of graph related to the intensitynet object
InitGraph.netTools | Creates an igraph network with the given data
intensitynet | Constructor of the class intensitynet.
IsIntensitynet | Is this class object intensitynet?
MeanNodeIntensity.intensitynetDir | Calculates the mean intensity of the given node (for directed networks)
MeanNodeIntensity.intensitynetMix | Calculates the mean intensity of the given node (for mixed networks)
MeanNodeIntensity.intensitynetUnd | Calculates the mean intensity of the given node (for undirected networks)
mix_intnet_chicago | This data is an intensitynet object containing an mixed network. The base data used is from Chicago, extracted from the spatstat package.
NodeGeneralCorrelation | Calculate dependence statistics on the network
NodeGeneralCorrelation.intensitynet | Calculate dependence statistics on the network
nodeIntensity.intensitynetDir | Calculates the mean intensity of the given node (for directed networks)
nodeIntensity.intensitynetMix | Calculates the mean intensity of the given node (for mixed networks)
nodeIntensity.intensitynetUnd | Calculates the mean intensity of the given node (for undirected networks)
NodeLocalCorrelation | Calculates local correlations based on nodes
NodeLocalCorrelation.intensitynet | Calculates local correlations based on nodes
PathTotalWeight | Calculates the total weight of the given path
PathTotalWeight.intensitynet | Calculates the total weight of the given path
plot.intensitynet | Plot intensitynet object
PlotHeatmap | Given an intensitynet object, plot network heatmaps
PlotHeatmap.intensitynet | Given an intensitynet object, plot network heatmaps
PlotNeighborhood | Plot the neighbors of a node including the closer events
PlotNeighborhood.intensitynet | Plot the neighbors of a node including the closer events
PointToLine.netTools | Gives the distance between an event and the line formed by two nodes.
PointToSegment | Gives the shortest distance between an event and a set of segments.
PointToSegment.netTools | Gives the shortest distance between an event and a set of segments.
PointToSegment_deprecated | Gives the shortest distance between an event and the segment formed by two nodes.
PointToSegment_deprecated.netTools | Gives the shortest distance between an event and the segment formed by two nodes.
RelateEventsToNetwork | Calculates intensity statistics for the given intensitynet object
RelateEventsToNetwork.intensitynetDir | Calculates intensity statistics for the given intensitynet object
RelateEventsToNetwork.intensitynetMix | Calculates intensity statistics for the given intensitynet object
RelateEventsToNetwork.intensitynetUnd | Calculates intensity statistics for the given intensitynet object
SetEdgeIntensity.netTools | Sets the given intensities as an edge attribute to the given igraph network
SetNetCoords.netTools | Creates an igraph network with the given data
SetNetworkAttribute.intensitynet | Set attributes to the network edges or nodes
SetNodeIntensity.netTools | Sets the given intensities as a node attribute to the given igraph network
ShortestNodeDistance.intensitynet | Given two nodes, gives its shortest distance based on the minimum amount of edges
ShortestPath | Given two nodes, calculates the shortest path and its total weight
ShortestPath.intensitynet | Given two nodes, calculates the shortest path and its total weight
summary | Summary of the intensitynet object
summary.intensitynet | Summary of the intensitynet object
Undirected2RandomDirectedAdjMtx.netTools | Converts a directed adjacency matrix to undirected
und_intnet_chicago | This data is an intensitynet object containing an undirected network. The base data used is from Chicago, extracted from the spatstat package.