# Motif Discovery in Functional Data

## Documentation for package ‘funMoDisco’ version 1.1.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

funMoDisco-package | funMoDisco: Motif Discovery in Functional Data
.check_fits | Check Fits
.diss_d0_d1_L2 | Dissimilarity Index for Multidimensional Curves
.domain | Domain Length Calculation for Curves
.find_min_diss | Find Minimum Dissimilarity
.find_occurrences | Find Occurrences of a Motif
.generate_coefficients | Generate Coefficients
.mapply_custom | Custom mapply Function for Parallel Processing
.resample | Resample Vector
.select_domain | .select_domain
.transform_list | Transform List Structure
.transform_to_matrix | Transform to Matrix
add_error_to_motif | Add Additive Error to Motif
add_motif | Add Motif to Base Curve
cluster_candidate_motifs | Cluster Candidate Motifs
cluster_candidate_motifs_plot | cluster_candidate_motifs_plot
compare_nodes | Compare Nodes
discoverMotifs | Functional Motif Discovery
filter_candidate_motifs | Filter Candidate Motifs
find_recommended_path | Find Recommended Path in a Tree Structure
funMoDisco | funMoDisco: Motif Discovery in Functional Data
generateCurves | Generate Functional Curves with Embedded Motifs
generateCurves-method | Generate Functional Curves with Embedded Motifs
generate_background_curve | Generate Background Curve
generate_curve_vector | Generate Curve Vector from FD Object
get_accolites | Get Accolites for a Given Leaf Label
get_minidend | Generate Minimum Dendrogram from Hierarchical Clustering
get_parents | Get Parent Nodes from a Given Node
get_path_complete | Get Complete Paths from a Dendrogram
initialChecks | Initial Checks for ProbKMA
motifSimulation-class | motifSimulationS4Class
motifSimulationBuilder | Create motifSimulation Object
motifs_search | Motif Search in Curves
motifs_search_plot | Plot Motif Search Results
padding | Pad a Matrix to a Specified Number of Rows
plot_motifs | Plot Embedded Motifs in Functional Curves
plot_motifs-method | Plot Embedded Motifs in Functional Curves
ProbKMA | ProbKMA Class
probKMA_plot | Plot the Results of probKMA
probKMA_silhouette_filter | Filter Motifs from probKMA Results Based on Silhouette and Size Thresholds
probKMA_silhouette_plot | Plot Silhouette Index from probKMA Results
probKMA_wrap | Wrapper for the Probabilistic K-means Algorithm (ProbKMA)
recommend_node | Recommend Node from a Numeric Vector
simulated200 | Simulated data for local clustering
simulatedHighDimensional | High Dimensional simulated data for local clustering
to_motifDiscovery | to_motifDiscovery
to_motifDiscovery-method | to_motifDiscovery