* using log directory 'd:/Rcompile/CRANpkg/local/4.6/autodb.Rcheck' * using R Under development (unstable) (2026-03-09 r89583 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 14.3.0 GNU Fortran (GCC) 14.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * current time: 2026-03-10 15:16:59 UTC * checking for file 'autodb/DESCRIPTION' ... OK * this is package 'autodb' version '3.2.4' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'autodb' can be installed ... OK * checking installed package size ... INFO installed size is 14.3Mb sub-directories of 1Mb or more: doc 13.7Mb * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s] OK * checking whether the package can be loaded with stated dependencies ... [0s] OK * checking whether the package can be unloaded cleanly ... [0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s] OK * checking whether the namespace can be unloaded cleanly ... [0s] OK * checking loading without being on the library search path ... [0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [11s] OK * checking Rd files ... [1s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... [0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [3s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [575s] ERROR Running 'spelling.R' [0s] Running 'testthat.R' [575s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(autodb) Attaching package: 'autodb' The following object is masked from 'package:stats': decompose > > test_check("autodb") Saving _problems/test-discover-1045.R [ FAIL 1 | WARN 0 | SKIP 1 | PASS 778 ] ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ • empty test (1): 'test-decompose.r:130:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-discover.r:971:7'): discover / for accuracy = 1, is invariant to: - having a non-false keep_rownames vs. adding row names as first column - method used - excluding a class vs. excluding attributes in that class - filtering by arguments (dependants/detset_limit) or by subsetting results - whether partition is transferred between dependants - whether bijections are skipped ── Falsifiable after 19 tests, and 2 shrinks 0) { dup_names <- unique(attr_names[duplicates]) sorted_dup_names <- dup_names[order(match(dup_names, attr_names))] stop("duplicate column names: ", toString(sorted_dup_names)) } if (any(!is.element(exclude, attr_names))) warning("there are attribute names in exclude not present in df") if (any(!is.element(dependants, attr_names))) warning("there are attribute names in dependants not present in df") dependants <- intersect(attr_names, dependants) dependants <- match(dependants, attr_names) valid_determinant_name <- !is.element(attr_names, exclude) valid_determinant_class <- !vapply(df, inherits, logical(1), exclude_class) valid_determinant_attrs_prefixing <- which(valid_determinant_name & valid_determinant_class) if (!is.na(digits)) { report(paste("formatting numerical/complex variables with", digits, "significant digits")) df[] <- lapply(df, format_if_float, digits = digits) } report("simplifying data types") df <- lookup_table(df) switch(method, DFD = DFD(df, accuracy = accuracy, full_cache = full_cache, store_cache = store_cache, skip_bijections = skip_bijections, determinants = valid_determinant_attrs_prefixing, dependants = dependants, detset_limit = detset_limit, report = report), FDHitsSep = FDHits(df, method = "Sep", determinants = valid_determinant_attrs_prefixing, dependants = dependants, detset_limit = detset_limit, report = report), FDHitsJoint = FDHits(df, method = "Joint", determinants = valid_determinant_attrs_prefixing, dependants = dependants, detset_limit = detset_limit, report = report))})(df = structure(list(KnhKRu = c(-0.000115179053274915, -2.49841533135623e-05, -2.49841533135623e-05), I.PrdSl = structure(c(NA, 2L, 1L), levels = c("FALSE", "TRUE"), class = "factor"), J = c(-4L, 0L, -1L)), class = "data.frame", row.names = c(NA, -3L)), accuracy = 1, keep_rownames = "J", method = "DFD", exclude_class = "logical", store_cache = FALSE, skip_bijections = FALSE): duplicate column names: J> Counterexample: [[1]] KnhKRu I.PrdSl J 1 -1.151791e-04 -4 2 -2.498415e-05 TRUE 0 3 -2.498415e-05 FALSE -1 [[2]] [1] "J" [[3]] character(0) [[4]] [1] 0 [ FAIL 1 | WARN 0 | SKIP 1 | PASS 778 ] Error: ! Test failures. Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [151s] OK * checking PDF version of manual ... [22s] OK * checking HTML version of manual ... [13s] OK * DONE Status: 1 ERROR