* using log directory 'd:/Rcompile/CRANpkg/local/4.6/REndo.Rcheck' * using R Under development (unstable) (2026-03-09 r89583 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 14.3.0 GNU Fortran (GCC) 14.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * current time: 2026-03-10 14:42:56 UTC * checking for file 'REndo/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'REndo' version '2.4.10' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'REndo' can be installed ... OK * used C++ compiler: 'g++.exe (GCC) 14.3.0' * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [3s] OK * checking whether the package can be loaded with stated dependencies ... [2s] OK * checking whether the package can be unloaded cleanly ... [2s] OK * checking whether the namespace can be loaded with stated dependencies ... [2s] OK * checking whether the namespace can be unloaded cleanly ... [2s] OK * checking loading without being on the library search path ... [3s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [10s] OK * checking Rd files ... [1s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... [1s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compiled code ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [10s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [155s] ERROR Running 'testthat.R' [155s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(REndo) > library(Formula) > > test_check("REndo") Saving _problems/test-correctness_multilevel-253.R Saving _problems/test-inputchecks_multilevel-112.R Saving _problems/test-inputchecks_multilevel-113.R | | | 0% | |=================================== | 50% | |======================================================================| 100% | | | 0% | |=================================== | 50% | |======================================================================| 100% | | | 0% | |=================================== | 50% | |======================================================================| 100% | | | 0% | |=================================== | 50% | |======================================================================| 100% [ FAIL 3 | WARN 0 | SKIP 30 | PASS 2152 ] ══ Skipped tests (30) ══════════════════════════════════════════════════════════ • On CRAN (30): 'test-correctness_copulacorrections.R:14:3', 'test-correctness_copulacorrections.R:90:3', 'test-correctness_copulacorrections.R:204:3', 'test-correctness_latentIV.R:10:3', 'test-correctness_multilevel.R:12:3', 'test-correctness_multilevel.R:62:3', 'test-correctness_multilevel.R:120:3', 'test-correctness_multilevel.R:151:3', 'test-correctness_multilevel.R:185:3', 'test-correctness_multilevel.R:213:3', 'test-correctness_multilevel.R:228:3', 'test-correctness_multilevel.R:293:3', 'test-runability_copulacorrection.R:12:3', 'test-runability_copulacorrection.R:30:3', 'test-runability_copulacorrection.R:90:3', 'test-runability_copulacorrection.R:184:3', 'test-runability_copulacorrection.R:204:3', 'test-runability_copulacorrection.R:219:3', 'test-runability_copulacorrection.R:303:3', 'test-runability_copulacorrection.R:316:3', 'test-runability_multilevel.R:22:3', 'test-runability_multilevel.R:61:3', 'test-runability_multilevel.R:75:3', 'test-runability_multilevel.R:93:3', 'test-runability_multilevel.R:103:3', 'test-runability_multilevel.R:112:3', 'test-runability_multilevel.R:124:3', 'test-runability_multilevel.R:136:3', 'test-runability_multilevel.R:157:3', 'test-s3methods_copualcorrection.R:46:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-correctness_multilevel.R:251:1'): (code run outside of `test_that()`) ── Expected `... <- NULL` to run silently. Actual noise: warnings. ── Failure ('test-inputchecks_multilevel.R:112:3'): Fail if no slope provided ── `multilevelIV(...)` threw an error with unexpected message. Expected match: "The above errors were encountered!" Actual message: "error in evaluating the argument 'x' in selecting a method for function 'forceSymmetric': non-conformable matrix dimensions in .Arith.Csparse(e1, e2, .Generic, class. = \"dgCMatrix\")" Backtrace: ▆ 1. ├─testthat::expect_error(...) at test-inputchecks_multilevel.R:112:3 2. │ └─testthat:::quasi_capture(...) 3. │ ├─testthat (local) .capture(...) 4. │ │ └─base::withCallingHandlers(...) 5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 6. ├─REndo::multilevelIV(...) 7. │ └─REndo:::multilevel_3levels(...) 8. │ ├─... + Matrix::bdiag(l.L2.V.part) 9. │ └─... + Matrix::bdiag(l.L2.V.part) 10. │ ├─Matrix::forceSymmetric(callGeneric(.M2gen(e1), .M2gen(e2))) 11. │ ├─methods::callGeneric(.M2gen(e1), .M2gen(e2)) 12. │ │ └─base::eval(call, parent.frame()) 13. │ │ └─base::eval(call, parent.frame()) 14. │ ├─.M2gen(e1) + .M2gen(e2) 15. │ └─.M2gen(e1) + .M2gen(e2) 16. │ └─Matrix:::.Arith.Csparse(e1, e2, .Generic, class. = "dgCMatrix") 17. │ └─Matrix:::.Ops.checkDim(dim(e1), dim(e2)) 18. │ └─base::stop(...) 19. └─base::.handleSimpleError(...) 20. └─base (local) h(simpleError(msg, call)) ── Failure ('test-inputchecks_multilevel.R:113:3'): Fail if no slope provided ── `multilevelIV(...)` threw an error with unexpected message. Expected match: "The above errors were encountered!" Actual message: "non-conformable matrix dimensions in .diag2T.smart(e1, e2, kind = \"d\") + e2" Backtrace: ▆ 1. ├─testthat::expect_error(...) at test-inputchecks_multilevel.R:113:3 2. │ └─testthat:::quasi_capture(...) 3. │ ├─testthat (local) .capture(...) 4. │ │ └─base::withCallingHandlers(...) 5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 6. └─REndo::multilevelIV(...) 7. └─REndo:::multilevel_3levels(...) 8. ├─Matrix::Diagonal(sigma.sq, n = nrow(X)) + ... 9. └─Matrix::Diagonal(sigma.sq, n = nrow(X)) + ... 10. ├─methods::callGeneric(.diag2T.smart(e1, e2, kind = "d"), e2) 11. │ └─base::eval(call, parent.frame()) 12. │ └─base::eval(call, parent.frame()) 13. ├─.diag2T.smart(e1, e2, kind = "d") + e2 14. └─.diag2T.smart(e1, e2, kind = "d") + e2 15. └─Matrix:::.Ops.checkDim(dim(e1), dim(e2)) [ FAIL 3 | WARN 0 | SKIP 30 | PASS 2152 ] Error: ! Test failures. Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [1s] OK * checking PDF version of manual ... [20s] OK * checking HTML version of manual ... [8s] OK * DONE Status: 1 ERROR