SeuratObject-package	SeuratObject-package
$.Assay	cash-.Assay
$.Assay5	cash-.Assay5
$.FOV	FOV-methods
$.JackStrawData	JackStrawData-methods
$.Seurat	cash-.Seurat
$.SeuratCommand	cash-.SeuratCommand
$.StdAssay	cash-.StdAssay
$<-.Assay	cash-.Assay
$<-.Assay5	cash-.Assay5
$<-.Seurat	cash-.Seurat
$<-.StdAssay	cash-.StdAssay
%!NA%	set-if-na
%!na%	set-if-na
%iff%	set-if-null
%NA%	set-if-na
%na%	set-if-na
%||%	set-if-null
.AssayClass	dot-AssayClass
.AssayClass.default	dot-AssayClass
.AssayClass.StdAssay	dot-AssayClass
.BPMatrixMode	dot-BPMatrixMode
.CalcN	dot-CalcN
.CheckFmargin	dot-CheckFmargin
.ClassPkg	dot-ClassPkg
.ClassPkg.default	dot-ClassPkg
.ClassPkg.DelayedArray	dot-ClassPkg
.ClassPkg.R6	dot-ClassPkg
.ClassPkg.R6ClassGenerator	dot-ClassPkg
.Collections	dot-Collections
.Contains	dot-Contains
.CreateStdAssay	dot-CreateStdAssay
.CreateStdAssay.default	dot-CreateStdAssay
.CreateStdAssay.list	dot-CreateStdAssay
.CreateStdAssay.Matrix	dot-CreateStdAssay
.CreateStdAssay.matrix	dot-CreateStdAssay
.DefaultFOV	dot-DefaultFOV
.Deprecate	dot-Deprecate
.DiskLoad	dot-DiskLoad
.DiskLoad.10xMatrixH5	dot-DiskLoad
.DiskLoad.AnnDataMatrixH5	dot-DiskLoad
.DiskLoad.default	dot-DiskLoad
.DiskLoad.DelayedMatrix	dot-DiskLoad
.DiskLoad.H5ADMatrix	dot-DiskLoad
.DiskLoad.HDF5Matrix	dot-DiskLoad
.DiskLoad.IterableMatrix	dot-DiskLoad
.DiskLoad.MatrixDir	dot-DiskLoad
.DiskLoad.MatrixH5	dot-DiskLoad
.DiskLoad.TileDBMatrix	dot-DiskLoad
.DollarNames.Assay	dot-DollarNames.Assay
.DollarNames.Assay5	dot-DollarNames.Assay5
.DollarNames.JackStrawData	JackStrawData-methods
.DollarNames.Seurat	dot-DollarNames.Seurat
.DollarNames.SeuratCommand	dot-DollarNames.SeuratCommand
.DollarNames.StdAssay	dot-DollarNames.StdAssay
.FileMove	dot-FileMove
.FilePath	dot-FilePath
.FilePath.default	dot-FilePath
.FilePath.DelayedMatrix	dot-FilePath
.FilePath.IterableMatrix	dot-FilePath
.FilterObjects	dot-FilterObjects
.FindObject	dot-FindObject
.GetConsensusFeatures	dot-GetConsensusFeatures
.GetMethod	dot-GetMethod
.GetVariableFeatures	dot-GetVariableFeatures
.IsFutureSeurat	dot-IsFutureSeurat
.KeyPattern	dot-KeyPattern
.MARGIN	dot-MARGIN
.PropagateList	dot-PropagateList
.RandomKey	dot-RandomKey
.SparseSlots	dot-SparseSlots
.SparseSlots.CsparseMatrix	dot-SparseSlots
.SparseSlots.RsparseMatrix	dot-SparseSlots
.SparseSlots.spam	dot-SparseSlots
.Subobjects	dot-Subobjects
AddMetaData	AddMetaData
AddMetaData-StdAssay	AddMetaData-StdAssay
AddMetaData.Assay	AddMetaData
AddMetaData.Assay5	AddMetaData
AddMetaData.Seurat	AddMetaData
AddMetaData.StdAssay	AddMetaData-StdAssay
AddSamples	merge.Seurat
aggregate	aggregate
aggregate.FOV	aggregate
aggregate.Molecules	aggregate
Angles	angles
as.Centroids	as.Centroids
as.Centroids.Segmentation	as.Centroids
as.Graph	as.Graph
as.Graph.Matrix	as.Graph
as.Graph.matrix	as.Graph
as.Graph.Neighbor	as.Graph
as.list.SeuratCommand	as.list.SeuratCommand
as.logical.JackStrawData	JackStrawData-methods
as.matrix.LogMap	as.matrix.LogMap
as.Neighbor	as.Neighbor
as.Neighbor.Graph	as.Neighbor
as.Segmentation	as.Centroids
as.Segmentation.Centroids	as.Centroids
as.Seurat	as.Seurat
as.sparse	as.sparse
as.sparse.data.frame	as.sparse
as.sparse.Matrix	as.sparse
as.sparse.matrix	as.sparse
as.sparse.ngCMatrix	as.sparse
Assay	Assay-class
Assay-class	Assay-class
Assay-validity	Assay-validity
Assay5	Assay5-class
Assay5-class	Assay5-class
Assay5-validity	Assay5-validity
Assay5T	Assay5T-class
Assay5T-class	Assay5T-class
AssayData	AssayData
AssayData-StdAssay	AssayData-StdAssay
Assays	ObjectAccess
Assays.Seurat	ObjectAccess
AttachDeps	AttachDeps
Boundaries	Boundaries
Boundaries.FOV	Boundaries
CastAssay	CastAssay
CastAssay-StdAssay	CastAssay-StdAssay
CastAssay.Assay5	CastAssay
CastAssay.StdAssay	CastAssay-StdAssay
Cells	Cells
Cells-StdAssay	Cells-StdAssay
Cells.Assay5	Cells
Cells.Centroids	Centroids-methods
Cells.default	Cells
Cells.DimReduc	Cells
Cells.FOV	FOV-methods
Cells.Neighbor	Cells
Cells.Segmentation	Segmentation-methods
Cells.SpatialImage	SpatialImage-methods
Cells.StdAssay	Cells-StdAssay
CellsByIdentities	CellsByIdentities
CellsByImage	CellsByImage
Centroids-class	Centroids-class
Centroids-methods	Centroids-methods
CheckDots	CheckDots
CheckFeaturesNames	CheckFeaturesNames
CheckGC	CheckGC
CheckLayersName	CheckLayersName
CheckMatrix	CheckMatrix
CheckMatrix.default	CheckMatrix
CheckMatrix.dMatrix	CheckMatrix
CheckMatrix.lMatrix	CheckMatrix
ClassKey	ClassKey
colMeans,Assay-method	colMeans-Assay-method
colMeans,Seurat-method	colMeans-Seurat-method
colMeans,StdAssay-method	v5-assay-summaries
colSums,Assay-method	colMeans-Assay-method
colSums,Seurat-method	colMeans-Seurat-method
colSums,StdAssay-method	v5-assay-summaries
Command	Command
Command.Seurat	Command
coordinates,Segmentation-method	Segmentation-methods
CreateAssay5Object	CreateAssay5Object
CreateAssayObject	CreateAssayObject
CreateCentroids	CreateCentroids
CreateDimReducObject	CreateDimReducObject
CreateFOV	CreateFOV
CreateFOV.Centroids	CreateFOV
CreateFOV.data.frame	CreateFOV
CreateFOV.list	CreateFOV
CreateFOV.Segmentation	CreateFOV
CreateMolecules	CreateMolecules
CreateMolecules.data.frame	CreateMolecules
CreateMolecules.Molecules	CreateMolecules
CreateMolecules.NULL	CreateMolecules
CreateSegmentation	CreateSegmentation
CreateSegmentation.data.frame	CreateSegmentation
CreateSegmentation.Segmentation	CreateSegmentation
CreateSegmentation.sf	CreateSegmentation
CreateSeuratObject	CreateSeuratObject
CreateSeuratObject.Assay	CreateSeuratObject
CreateSeuratObject.Assay5	CreateSeuratObject
CreateSeuratObject.default	CreateSeuratObject
Crop	Crop
Crop.FOV	Crop
DefaultAssay	DefaultAssay
DefaultAssay-StdAssay	DefaultAssay-StdAssay
DefaultAssay.Assay	DefaultAssay
DefaultAssay.Assay5	DefaultAssay
DefaultAssay.DimReduc	DefaultAssay
DefaultAssay.Graph	DefaultAssay
DefaultAssay.Seurat	DefaultAssay
DefaultAssay.SeuratCommand	DefaultAssay
DefaultAssay.SpatialImage	SpatialImage-methods
DefaultAssay.StdAssay	DefaultAssay-StdAssay
DefaultAssay<-	DefaultAssay
DefaultAssay<-.Assay	DefaultAssay
DefaultAssay<-.Assay5	DefaultAssay
DefaultAssay<-.DimReduc	DefaultAssay
DefaultAssay<-.Graph	DefaultAssay
DefaultAssay<-.Seurat	DefaultAssay
DefaultAssay<-.SpatialImage	SpatialImage-methods
DefaultAssay<-.StdAssay	DefaultAssay-StdAssay
DefaultBoundary	Boundaries
DefaultBoundary.FOV	Boundaries
DefaultBoundary<-	Boundaries
DefaultBoundary<-.FOV	Boundaries
DefaultDimReduc	DefaultDimReduc
DefaultFOV	DefaultFOV
DefaultFOV.Seurat	DefaultFOV
DefaultFOV<-	DefaultFOV
DefaultFOV<-.Seurat	DefaultFOV
DefaultLayer	DefaultLayer
DefaultLayer-StdAssay	DefaultLayer-StdAssay
DefaultLayer.Assay	DefaultLayer
DefaultLayer.Assay5	DefaultLayer
DefaultLayer.StdAssay	DefaultLayer-StdAssay
DefaultLayer<-	DefaultLayer
DefaultLayer<-.Assay5	DefaultLayer
DefaultLayer<-.StdAssay	DefaultLayer-StdAssay
Degrees	angles
dim.Assay	dim.Assay
dim.Assay5	dim.Assay5
dim.DimReduc	dim.DimReduc
dim.Neighbor	Neighbor-methods
dim.Seurat	dim.Seurat
dim.SpatialImage	SpatialImage-methods
dim.StdAssay	dim.StdAssay
dimnames.Assay	dimnames.Assay
dimnames.Assay5	dimnames.Assay5
dimnames.DimReduc	dim.DimReduc
dimnames.Seurat	dimnames.Seurat
dimnames.StdAssay	dimnames.StdAssay
dimnames<-.Assay	dimnames.Assay
dimnames<-.Assay5	dimnames.Assay5
dimnames<-.Seurat	dimnames.Seurat
dimnames<-.StdAssay	dimnames.StdAssay
DimReduc	DimReduc-class
DimReduc-class	DimReduc-class
DimReduc-validity	DimReduc-validity
Distances	Distances
Distances.Neighbor	Distances
droplevels.LogMap	droplevels.LogMap
droplevels.Seurat	Idents
Embeddings	Embeddings
Embeddings.DimReduc	Embeddings
Embeddings.Seurat	Embeddings
EmptyDF	EmptyDF
EmptyMatrix	EmptyMatrix
ExtractField	ExtractField
Features	Cells
Features.Assay5	Cells
Features.FOV	FOV-methods
Features.Molecules	Molecules-methods
Features.StdAssay	Cells-StdAssay
FetchData	FetchData
FetchData.DimReduc	FetchData
FetchData.FOV	FOV-methods
FetchData.Seurat	FetchData
FilterObjects	FilterObjects
FOV	FOV-class
FOV-class	FOV-class
FOV-methods	FOV-methods
FOV-validity	FOV-validity
GetAssayData	AssayData
GetAssayData.Assay	AssayData
GetAssayData.Seurat	AssayData
GetAssayData.StdAssay	AssayData-StdAssay
GetImage	GetImage
GetImage.Seurat	GetImage
GetImage.SpatialImage	SpatialImage-methods
GetTissueCoordinates	GetTissueCoordinates
GetTissueCoordinates.Centroids	Centroids-methods
GetTissueCoordinates.FOV	GetTissueCoordinates
GetTissueCoordinates.Molecules	Molecules-methods
GetTissueCoordinates.Segmentation	Segmentation-methods
GetTissueCoordinates.Seurat	GetTissueCoordinates
GetTissueCoordinates.SpatialImage	SpatialImage-methods
Graph	Graph-class
Graph-class	Graph-class
Graphs	ObjectAccess
handlers	reexports
head.Assay	sub-sub-.Assay
head.Assay5	sub-sub-.Assay5
head.Seurat	sub-sub-.Seurat
head.StdAssay	sub-sub-.StdAssay
HVFInfo	VariableFeatures
HVFInfo.Assay	VariableFeatures
HVFInfo.Assay5	VariableFeatures
HVFInfo.Seurat	VariableFeatures
HVFInfo.StdAssay	VariableFeatures-StdAssay
Idents	Idents
Idents.Seurat	Idents
Idents<-	Idents
Idents<-.Seurat	Idents
Images	Images
Index	NNIndex
Index.Neighbor	NNIndex
Index<-	NNIndex
Index<-.Neighbor	NNIndex
Indices	Indices
Indices.Neighbor	Indices
intersect	reexports
intersect.LogMap	intersect.LogMap
is.finite.Centroids	Centroids-methods
is.infinite.Centroids	Centroids-methods
IsFutureSeurat	dot-IsFutureSeurat
IsGlobal	IsGlobal
IsGlobal.default	IsGlobal
IsGlobal.DimReduc	IsGlobal
IsGlobal.SpatialImage	SpatialImage-methods
IsMatrixEmpty	IsMatrixEmpty
IsMatrixEmpty.default	IsMatrixEmpty
IsNamedList	IsNamedList
IsS4List	s4list
IsSparse	IsSparse
JackStrawData	JackStrawData-class
JackStrawData-class	JackStrawData-class
JackStrawData-methods	JackStrawData-methods
JoinLayers	SplitLayers
JoinLayers.Assay5	SplitLayers
JoinLayers.Seurat	SplitLayers
JS	JS
JS.DimReduc	JS
JS.JackStrawData	JS
JS<-	JS
JS<-.DimReduc	JS
JS<-.JackStrawData	JS
Key	Key
Key-validity	Key-validity
Key.Assay	Key
Key.Assay5	Key
Key.character	KeyMixin-class
Key.DimReduc	Key
Key.KeyMixin	KeyMixin-class
Key.Seurat	Key
Key.SpatialImage	SpatialImage-methods
Key<-	Key
Key<-.Assay	Key
Key<-.Assay5	Key
Key<-.DimReduc	Key
Key<-.KeyMixin	KeyMixin-class
Key<-.SpatialImage	SpatialImage-methods
KeyMixin	KeyMixin-class
KeyMixin-class	KeyMixin-class
Keys	Key
Keys.FOV	FOV-methods
Keys.Seurat	Key
labels.LogMap	labels.LogMap
LayerData	Layers
LayerData.Assay	Layers
LayerData.Assay5	Layers
LayerData.Seurat	Layers
LayerData.StdAssay	Layers-StdAssay
LayerData<-	Layers
LayerData<-.Assay	Layers
LayerData<-.Assay5	Layers
LayerData<-.Seurat	Layers
LayerData<-.StdAssay	Layers-StdAssay
Layers	Layers
Layers-StdAssay	Layers-StdAssay
Layers.Assay	Layers
Layers.Assay5	Layers
Layers.Seurat	Layers
Layers.StdAssay	Layers-StdAssay
length.Centroids	Centroids-methods
length.DimReduc	dim.DimReduc
length.FOV	FOV-methods
lengths.Centroids	Centroids-methods
lengths.Segmentation	Segmentation-methods
levels.Seurat	Idents
levels<-.Seurat	Idents
ListToS4	s4list
Loadings	Loadings
Loadings.DimReduc	Loadings
Loadings.Seurat	Loadings
Loadings<-	Loadings
Loadings<-.DimReduc	Loadings
LoadSeuratRds	SaveSeuratRds
LogMap	LogMap-class
LogMap-class	LogMap-class
LogMap-validity	LogMap-validity
LogSeuratCommand	LogSeuratCommand
MatchCells	MatchCells
MatchCells.character	MatchCells
MatchCells.NULL	MatchCells
MatchCells.numeric	MatchCells
merge	merge.Seurat
merge.Assay	merge.Assay
merge.Assay5	merge.Assay5
merge.DimReduc	merge.DimReduc
merge.Seurat	merge.Seurat
merge.StdAssay	merge.StdAssay
MergeSeurat	merge.Seurat
Misc	Misc
Misc-StdAssay	Misc-StdAssay
Misc.Assay	Misc
Misc.Assay5	Misc
Misc.DimReduc	Misc
Misc.Seurat	Misc
Misc.StdAssay	Misc-StdAssay
Misc<-	Misc
Misc<-.Assay	Misc
Misc<-.Assay5	Misc
Misc<-.DimReduc	Misc
Misc<-.Seurat	Misc
Misc<-.StdAssay	Misc-StdAssay
Molecules	Boundaries
Molecules-class	Molecules-class
Molecules-methods	Molecules-methods
Molecules.FOV	Boundaries
names.DimReduc	dim.DimReduc
names.FOV	FOV-methods
names.Seurat	names.Seurat
Neighbor	Neighbor-class
Neighbor-class	Neighbor-class
Neighbor-methods	Neighbor-methods
Neighbors	ObjectAccess
old-assign	old-assign
oldseurat	oldseurat-class
Overlay	Overlay
Overlay,Centroids,SpatialPolygons-method	Overlay
Overlay,FOV,FOV-method	Overlay
Overlay,FOV,Spatial-method	Overlay
Overlay,FOV,SpatialPolygons-method	Overlay
Overlay,Molecules,SpatialPolygons-method	Overlay
Overlay,Segmentation,SpatialPolygons-method	Overlay
PackageCheck	PackageCheck
pbmc_small	pbmc_small
plan	reexports
PolyVtx	PolyVtx
print	print.DimReduc
print.DimReduc	print.DimReduc
Project	Project
Project.Seurat	Project
Project<-	Project
Project<-.Seurat	Project
Radians	angles
Radius	Radius
Radius.Centroids	Centroids-methods
Radius.SpatialImage	SpatialImage-methods
RandomName	RandomName
Reductions	ObjectAccess
reexports	reexports
RegisterSparseMatrix	RegisterSparseMatrix
remove-object	sub-subset-Seurat-NULL
remove-objects	sub-subset-Seurat-NULL
RenameAssays	RenameAssays
RenameCells	RenameCells
RenameCells-StdAssay	RenameCells-StdAssay
RenameCells.Assay	RenameCells
RenameCells.Assay5	RenameCells
RenameCells.Centroids	Centroids-methods
RenameCells.DimReduc	RenameCells
RenameCells.FOV	FOV-methods
RenameCells.Neighbor	RenameCells
RenameCells.Segmentation	Segmentation-methods
RenameCells.Seurat	RenameCells
RenameCells.SpatialImage	SpatialImage-methods
RenameCells.StdAssay	RenameCells-StdAssay
RenameIdent	Idents
RenameIdents	Idents
RenameIdents.Seurat	Idents
ReorderIdent	Idents
ReorderIdent.Seurat	Idents
rowMeans,Assay-method	colMeans-Assay-method
rowMeans,Seurat-method	colMeans-Seurat-method
rowMeans,StdAssay-method	v5-assay-summaries
RowMergeSparseMatrices	RowMergeSparseMatrices
rowSums,Assay-method	colMeans-Assay-method
rowSums,Seurat-method	colMeans-Seurat-method
rowSums,StdAssay-method	v5-assay-summaries
s4list	s4list
S4ToList	s4list
S4ToList.default	s4list
S4ToList.list	s4list
SaveSeuratRds	SaveSeuratRds
Segmentation-class	Segmentation-class
Segmentation-methods	Segmentation-methods
Segmentation-validity	Segmentation-validity
set-if-na	set-if-na
set-if-null	set-if-null
SetAssayData	AssayData
SetAssayData.Assay	AssayData
SetAssayData.Seurat	AssayData
SetAssayData.StdAssay	AssayData-StdAssay
SetDimReduction	CreateDimReducObject
SetIdent	Idents
SetIdent.Seurat	Idents
Seurat	Seurat-class
Seurat-class	Seurat-class
seurat-class	oldseurat-class
Seurat-validity	Seurat-validity
SeuratAccess	AddMetaData
SeuratCommand	SeuratCommand-class
SeuratCommand-class	SeuratCommand-class
SeuratObject	SeuratObject-package
SeuratObject-options	SeuratObject-options
show,Assay-method	show-Assay-method
show,Centroids-method	Centroids-methods
show,DimReduc-method	show-DimReduc-method
show,FOV-method	FOV-methods
show,Graph-method	show-Graph-method
show,JackStrawData-method	JackStrawData-methods
show,LogMap-method	show-LogMap-method
show,Molecules-method	Molecules-methods
show,Neighbor-method	Neighbor-methods
show,Segmentation-method	Segmentation-methods
show,Seurat-method	show-Seurat-method
show,seurat-method	show-oldseurat-method
show,SeuratCommand-method	show-SeuratCommand-method
show,SpatialImage-method	SpatialImage-methods
show,StdAssay-method	show-StdAssay-method
Simplify	Simplify
Simplify.Spatial	Simplify
SparseEmptyMatrix	SparseEmptyMatrix
SpatialImage	SpatialImage-class
SpatialImage-class	SpatialImage-class
SpatialImage-methods	SpatialImage-methods
SpatiallyVariableFeatures	VariableFeatures
SpatiallyVariableFeatures.Assay	VariableFeatures
SpatiallyVariableFeatures.Assay5	VariableFeatures
SpatiallyVariableFeatures.Seurat	VariableFeatures
SpatiallyVariableFeatures.StdAssay	VariableFeatures-StdAssay
split,StdAssay-method	split.StdAssay
split.Assay	split.Assay
split.Assay5	split.Assay5
split.Seurat	split.Seurat
split.StdAssay	split.StdAssay
StashIdent	Idents
StashIdent.Seurat	Idents
StdAssay	StdAssay-class
StdAssay-class	StdAssay-class
StdAssay-validity	StdAssay-validity
Stdev	Stdev
Stdev.DimReduc	Stdev
Stdev.Seurat	Stdev
StitchMatrix	StitchMatrix
subset	subset.Seurat
subset.Assay	subset.Assay
subset.Assay5	subset.Assay5
subset.Centroids	Centroids-methods
subset.DimReduc	subset.DimReduc
subset.FOV	FOV-methods
subset.Molecules	Molecules-methods
subset.Segmentation	Segmentation-methods
subset.Seurat	subset.Seurat
subset.SpatialImage	SpatialImage-methods
subset.StdAssay	subset.StdAssay
SVFInfo	VariableFeatures
SVFInfo.Assay	VariableFeatures
SVFInfo.Assay5	VariableFeatures
SVFInfo.Seurat	VariableFeatures
SVFInfo.StdAssay	VariableFeatures
tail.Assay	sub-sub-.Assay
tail.Assay5	sub-sub-.Assay5
tail.Seurat	sub-sub-.Seurat
tail.StdAssay	sub-sub-.StdAssay
Theta	Theta
Theta.Centroids	Centroids-methods
Tool	Tool
Tool.Seurat	Tool
Tool<-	Tool
Tool<-.Seurat	Tool
Tools	Tool
UpdateSeuratObject	UpdateSeuratObject
UpdateSlots	UpdateSlots
v5-assay-summaries	v5-assay-summaries
VariableFeatures	VariableFeatures
VariableFeatures-StdAssay	VariableFeatures-StdAssay
VariableFeatures.Assay	VariableFeatures
VariableFeatures.Assay5	VariableFeatures
VariableFeatures.Seurat	VariableFeatures
VariableFeatures.StdAssay	VariableFeatures-StdAssay
VariableFeatures<-	VariableFeatures
VariableFeatures<-.Assay	VariableFeatures
VariableFeatures<-.Assay5	VariableFeatures-StdAssay
VariableFeatures<-.Seurat	VariableFeatures
VariableFeatures<-.StdAssay	VariableFeatures-StdAssay
Version	Version
Version.Seurat	Version
WhichCells	WhichCells
WhichCells.Assay	WhichCells
WhichCells.Seurat	WhichCells
with_progress	reexports
[,Centroids,character,ANY,ANY-method	Centroids-methods
[,Centroids,numeric,ANY,ANY-method	Centroids-methods
[,LogMap	sub-LogMap-method
[,LogMap,character,character,ANY-method	sub-LogMap-method
[,LogMap,character,missing,ANY-method	sub-LogMap-method
[,LogMap,missing,character,ANY-method	sub-LogMap-method
[,LogMap,missing,missing,ANY-method	sub-LogMap-method
[,LogMap,missing,numeric,ANY-method	sub-LogMap-method
[,LogMap,numeric,missing,ANY-method	sub-LogMap-method
[,LogMap,numeric,numeric,ANY-method	sub-LogMap-method
[,Segmentation,ANY,ANY,ANY-method	Segmentation-methods
[.Assay	sub-.Assay
[.Assay5	sub-.Assay5
[.DimReduc	sub-.DimReduc
[.FOV	FOV-methods
[.Seurat	subset.Seurat
[.SeuratCommand	sub-.SeuratCommand
[.SpatialImage	SpatialImage-methods
[.StdAssay	sub-.StdAssay
[<-,Assay,character,ANY,ANY-method	sub-.Assay
[<-,Assay5,character,ANY,ANY-method	sub-.Assay5
[<-,StdAssay,character,ANY,ANY-method	sub-.StdAssay
[[,LogMap,character,missing-method	LogMap-class
[[,LogMap,integer,missing-method	sub-sub-LogMap-internal-method
[[,LogMap,missing,missing-method	LogMap-class
[[,LogMap,NULL,missing-method	LogMap-class
[[,LogMap,numeric,missing-method	sub-sub-LogMap-internal-method
[[.Assay	sub-sub-.Assay
[[.Assay5	sub-sub-.Assay5
[[.DimReduc	sub-sub-.DimReduc
[[.FOV	FOV-methods
[[.Seurat	sub-sub-.Seurat
[[.StdAssay	sub-sub-.StdAssay
[[<-,Assay,ANY,ANY,ANY-method	sub-sub-.Assay
[[<-,Assay,missing,missing,data.frame-method	sub-sub-.Assay
[[<-,Assay5,ANY,ANY,ANY-method	sub-sub-.Assay5
[[<-,FOV,character,missing,Centroids-method	FOV-methods
[[<-,FOV,character,missing,Molecules-method	FOV-methods
[[<-,FOV,character,missing,NULL-method	FOV-methods
[[<-,FOV,character,missing,Segmentation-method	FOV-methods
[[<-,LogMap,character,missing,character-method	LogMap-class
[[<-,LogMap,character,missing,integer-method	LogMap-class
[[<-,LogMap,character,missing,NULL-method	LogMap-class
[[<-,LogMap,character,missing,numeric-method	LogMap-class
[[<-,Segmentation,character,missing,ANY-method	Segmentation-methods
[[<-,Segmentation,character,missing,NULL-method	Segmentation-methods
[[<-,Seurat	sub-subset-Seurat
[[<-,Seurat,character,ANY,ANY-method	old-assign
[[<-,Seurat,character,missing,Assay-method	sub-subset-Seurat
[[<-,Seurat,character,missing,Assay5-method	sub-subset-Seurat
[[<-,Seurat,character,missing,data.frame-method	cash-.Seurat
[[<-,Seurat,character,missing,DimReduc-method	sub-subset-Seurat
[[<-,Seurat,character,missing,factor-method	cash-.Seurat
[[<-,Seurat,character,missing,Graph-method	sub-subset-Seurat
[[<-,Seurat,character,missing,list-method	cash-.Seurat
[[<-,Seurat,character,missing,Neighbor-method	sub-subset-Seurat
[[<-,Seurat,character,missing,NULL-method	sub-subset-Seurat-NULL
[[<-,Seurat,character,missing,SeuratCommand-method	sub-subset-Seurat
[[<-,Seurat,character,missing,SpatialImage-method	sub-subset-Seurat
[[<-,Seurat,character,missing,StdAssay-method	sub-subset-Seurat-character-missing-StdAssay-method
[[<-,Seurat,character,missing,vector-method	cash-.Seurat
[[<-,Seurat,missing,missing,data.frame-method	cash-.Seurat
[[<-,Seurat,missing,missing,list-method	cash-.Seurat
[[<-,Seurat,NULL	sub-subset-Seurat-NULL
[[<-,StdAssay,character,missing,data.frame-method	sub-sub-.StdAssay
[[<-,StdAssay,character,missing,factor-method	sub-sub-.StdAssay
[[<-,StdAssay,character,missing,NULL-method	sub-sub-.StdAssay
[[<-,StdAssay,character,missing,vector-method	sub-sub-.StdAssay
[[<-,StdAssay,missing,missing,data.frame-method	sub-sub-.StdAssay
[[<-,StdAssay,missing,missing,NULL-method	sub-sub-.StdAssay
[[<-,StdAssay,numeric,missing,ANY-method	sub-sub-.StdAssay
[[<-.Seurat	sub-subset-Seurat
\S4method{[[<-}{Seurat,character,missing,Assay}	sub-subset-Seurat
\S4method{[[<-}{Seurat,character,missing,NULL}	sub-subset-Seurat-NULL
