* using log directory 'd:/Rcompile/CRANpkg/local/4.5/rplec.Rcheck'
* using R Under development (unstable) (2025-02-11 r87713 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.3.0
    GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'rplec/DESCRIPTION' ... OK
* this is package 'rplec' version '0.1.3'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'rplec' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s] OK
* checking whether the package can be unloaded cleanly ... [1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s] OK
* checking loading without being on the library search path ... [1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [5s] OK
* checking Rd files ... [1s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... [2s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [61s] ERROR
Running examples in 'rplec-Ex.R' failed
The error most likely occurred in:

> ### Name: download_beta_values_case
> ### Title: Access Beta values at individual CpG sites for case group
> ### Aliases: download_beta_values_case
> ### Keywords: dataset
> 
> ### ** Examples
> 
> 
> beta_values_case <- download_beta_values_case()
trying URL 'https://raw.githubusercontent.com/herdiantrisufriyana/rplec/master/data/beta_values_case.rda'
Content type 'application/octet-stream' length 18750575 bytes (17.9 MB)
===============================================
downloaded 16.9 MB

Warning in utils::download.file(url, temp, mode = "wb") :
  downloaded length 17764288 != reported length 18750575
Warning in utils::download.file(url, temp, mode = "wb") :
  URL 'https://raw.githubusercontent.com/herdiantrisufriyana/rplec/master/data/beta_values_case.rda': Timeout of 60 seconds was reached
Error in utils::download.file(url, temp, mode = "wb") : 
  download from 'https://raw.githubusercontent.com/herdiantrisufriyana/rplec/master/data/beta_values_case.rda' failed
Calls: download_beta_values_case -> <Anonymous>
Execution halted
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [148s] ERROR
  Running 'testthat.R' [148s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(rplec)
  > 
  > test_check("rplec")
  trying URL 'https://raw.githubusercontent.com/herdiantrisufriyana/rplec/master/data/beta_values_case.rda'
  Content type 'application/octet-stream' length 18750575 bytes (17.9 MB)
  ===========================================
  downloaded 15.6 MB
  
  trying URL 'https://raw.githubusercontent.com/herdiantrisufriyana/rplec/master/data/beta_values_case.rda'
  Content type 'application/octet-stream' length 18750575 bytes (17.9 MB)
  =========================================
  downloaded 15.0 MB
  
  trying URL 'https://raw.githubusercontent.com/herdiantrisufriyana/rplec/master/data/beta_values_case.rda'
  Content type 'application/octet-stream' length 18750575 bytes (17.9 MB)
  ==================================================
  downloaded 17.9 MB
  
  [ FAIL 2 | WARN 4 | SKIP 0 | PASS 23 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-bmiq_norm_450k.R:9:3'): bmiq_norm_450k validates inputs correctly ──
  Error in `utils::download.file(url, temp, mode = "wb")`: download from 'https://raw.githubusercontent.com/herdiantrisufriyana/rplec/master/data/beta_values_case.rda' failed
  Backtrace:
      ▆
   1. └─rplec::download_beta_values_case() at test-bmiq_norm_450k.R:9:3
   2.   └─utils::download.file(url, temp, mode = "wb")
  ── Error ('test-plec.R:5:3'): plec validates inputs correctly ──────────────────
  Error in `utils::download.file(url, temp, mode = "wb")`: download from 'https://raw.githubusercontent.com/herdiantrisufriyana/rplec/master/data/beta_values_case.rda' failed
  Backtrace:
      ▆
   1. └─rplec::download_beta_values_case() at test-plec.R:5:3
   2.   └─utils::download.file(url, temp, mode = "wb")
  
  [ FAIL 2 | WARN 4 | SKIP 0 | PASS 23 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [62s] ERROR
Error(s) in re-building vignettes:
--- re-building 'placental_aging_analysis.Rmd' using rmarkdown
trying URL 'https://raw.githubusercontent.com/herdiantrisufriyana/rplec/master/data/beta_values_case.rda'
Content type 'application/octet-stream' length 18750575 bytes (17.9 MB)
==================================
downloaded 12.2 MB


Quitting from lines 35-39 [Load our example data] (placental_aging_analysis.Rmd)
Error: processing vignette 'placental_aging_analysis.Rmd' failed with diagnostics:
download from 'https://raw.githubusercontent.com/herdiantrisufriyana/rplec/master/data/beta_values_case.rda' failed
--- failed re-building 'placental_aging_analysis.Rmd'

SUMMARY: processing the following file failed:
  'placental_aging_analysis.Rmd'

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [27s] OK
* checking HTML version of manual ... [2s] OK
* DONE
Status: 3 ERRORs