* using log directory 'd:/Rcompile/CRANpkg/local/4.5/medfate.Rcheck'
* using R Under development (unstable) (2025-03-11 r87944 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'medfate/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'medfate' version '4.8.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'medfate' can be installed ... OK
* used C++ compiler: 'g++.exe (GCC) 14.2.0'
* checking installed package size ... INFO
  installed size is  5.8Mb
  sub-directories of 1Mb or more:
    libs   4.5Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s] OK
* checking whether the package can be loaded with stated dependencies ... [1s] OK
* checking whether the package can be unloaded cleanly ... [1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s] OK
* checking whether the namespace can be unloaded cleanly ... [2s] OK
* checking loading without being on the library search path ... [2s] OK
* checking whether startup messages can be suppressed ... [1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [24s] OK
* checking Rd files ... [4s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... [0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compiled code ... OK
* checking examples ... [10s] ERROR
Running examples in 'medfate-Ex.R' failed
The error most likely occurred in:

> ### Name: plot.spwb_day
> ### Title: Plots simulation results for one day
> ### Aliases: plot.spwb_day plot.growth_day plot.pwb_day
> 
> ### ** Examples
> 
> #Load example daily meteorological data
> data(examplemeteo)
> 
> #Load example plot plant data
> data(exampleforest)
> 
> #Default species parameterization
> data(SpParamsMED)
> 
> #Define soil with default soil params (2 layers)
> examplesoil <- defaultSoilParams(4)
> 
> #Switch to 'Sperry' transpiration mode
> control <- defaultControl("Sperry")
> 
> #Enable subdaily results for plotting
> control["subdailyResults"] <- TRUE
> 
> #Initialize model inputs
> x2 <- spwbInput(exampleforest,examplesoil, SpParamsMED, control)
> 
> #Simulate one day only
> d <- 100
> date <- examplemeteo$dates[d]
> meteovec <- unlist(examplemeteo[d,])
> sd2 <- spwb_day(x2, date, meteovec,
+               latitude = 41.82592, elevation = 100, slope= 0, aspect = 0)
Package 'meteoland' [ver. 2.2.3]
Error in spwb_day(x2, date, meteovec, latitude = 41.82592, elevation = 100,  : 
  NA Idf
Execution halted
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [28s] ERROR
  Running 'testthat.R' [28s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(medfate)
  Package 'medfate' [ver. 4.8.0]
  > 
  > test_check("medfate")
  Package 'meteoland' [ver. 2.2.3]
  c++ error: NA Idf
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  [ FAIL 10 | WARN 0 | SKIP 0 | PASS 453 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test_growth.R:105:3'): growth can be run disabling output ───────────
  Error in `medfate::growth_day(growthInput(exampleforest, examplesoil, SpParamsMED, 
      control), date, meteovec, latitude = 41.82592, elevation = 100, 
      slope = 0, aspect = 0, modifyInput = FALSE)`: NA Idf
  Backtrace:
      ▆
   1. ├─testthat::expect_s3_class(...) at test_growth.R:105:3
   2. │ └─testthat::quasi_label(enquo(object), arg = "object")
   3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
   4. └─medfate::growth_day(...)
  ── Error ('test_growth.R:120:3'): growth_day gives same result with inner and direct calls ──
  Error in `medfate::growth_day_inner(ic, x2, date, meteovec, latitude = 41.82592, 
      elevation = 100, slope = 0, aspect = 0, modifyInput = FALSE)`: NA Idf
  Backtrace:
      ▆
   1. └─medfate::growth_day_inner(...) at test_growth.R:120:3
  ── Error ('test_growth.R:156:3'): growth_day gives same result with inner and direct calls with general communication ──
  Error in `medfate::growth_day(x2d, date, meteovec, latitude = 41.82592, 
      elevation = 100, slope = 0, aspect = 0, modifyInput = TRUE)`: NA Idf
  Backtrace:
      ▆
   1. └─medfate::growth_day(...) at test_growth.R:156:3
  ── Error ('test_post_processing.R:148:5'): Can produce all advanced subdaily spwb plots ──
  Error in `t.default(ori)`: argument is not a matrix
  Backtrace:
      ▆
   1. ├─testthat::expect_s3_class(...) at test_post_processing.R:148:5
   2. │ └─testthat::quasi_label(enquo(object), arg = "object")
   3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
   4. ├─base::plot(S2, "LeafPsi", subdaily = TRUE)
   5. └─medfate::plot.spwb(S2, "LeafPsi", subdaily = TRUE)
   6.   └─medfate:::.plotsubdaily(...)
   7.     └─medfate:::.extractSubdaily(x, "SunlitLeaves$Psi", dates)
   8.       ├─base::t(ori)
   9.       └─base::t.default(ori)
  ── Error ('test_post_processing.R:216:5'): Can produce all advanced spwb_day plots ──
  Error in `spwb_day(x2, examplemeteo$dates[d1], unlist(examplemeteo[d1, 
      ]), latitude = 41.82592, elevation = 100, slope = 0, aspect = 0)`: NA Idf
  Backtrace:
      ▆
   1. └─medfate::spwb_day(...) at test_post_processing.R:216:5
  ── Error ('test_post_processing.R:345:5'): Can produce all advanced subdaily growth plots ──
  Error in `matrix(nrow = numDates * numSteps, ncol = ncols + 1)`: invalid 'ncol' value (too large or NA)
  Backtrace:
      ▆
   1. ├─testthat::expect_s3_class(...) at test_post_processing.R:345:5
   2. │ └─testthat::quasi_label(enquo(object), arg = "object")
   3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
   4. ├─base::plot(G2, "GrossPhotosynthesis", subdaily = TRUE)
   5. └─medfate::plot.growth(G2, "GrossPhotosynthesis", subdaily = TRUE)
   6.   └─medfate:::.plotsubdaily(...)
   7.     └─medfate:::.extractSubdaily(x, type, dates)
   8.       ├─base::data.frame(...)
   9.       └─base::matrix(nrow = numDates * numSteps, ncol = ncols + 1)
  ── Error ('test_post_processing.R:379:5'): Can produce all advanced growth_day plots ──
  Error in `growth_day(x2, examplemeteo$dates[d1], unlist(examplemeteo[d1, 
      ]), latitude = 41.82592, elevation = 100, slope = 0, aspect = 0)`: NA Idf
  Backtrace:
      ▆
   1. └─medfate::growth_day(...) at test_post_processing.R:379:5
  ── Error ('test_pre_processing.R:52:3'): Stomatal regulation plot can be shown ──
  <Rcpp::exception/C++Error/error/condition>
  Error: NA Idf
  Backtrace:
      ▆
   1. ├─testthat::expect_s3_class(...) at test_pre_processing.R:52:3
   2. │ └─testthat::quasi_label(enquo(object), arg = "object")
   3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
   4. └─medfate::transp_stomatalRegulationPlot(...)
   5.   └─medfate::transp_transpirationSperry(...)
  ── Error ('test_spwb.R:114:3'): spwb_day gives same result with inner and direct calls ──
  Error in `medfate::spwb_day(x2, date, meteovec, latitude = 41.82592, elevation = 100, 
      slope = 0, aspect = 0, modifyInput = FALSE)`: NA Idf
  Backtrace:
      ▆
   1. └─medfate::spwb_day(...) at test_spwb.R:114:3
  ── Error ('test_spwb.R:149:3'): spwb_day gives same result with inner and direct calls with general communication ──
  Error in `medfate::spwb_day_inner(ic, x2i, date, meteovec, latitude = 41.82592, 
      elevation = 100, slope = 0, aspect = 0, modifyInput = TRUE)`: NA Idf
  Backtrace:
      ▆
   1. └─medfate::spwb_day_inner(...) at test_spwb.R:149:3
  
  [ FAIL 10 | WARN 0 | SKIP 0 | PASS 453 ]
  Error: Test failures
  Execution halted
* checking PDF version of manual ... [35s] OK
* checking HTML version of manual ... [19s] OK
* DONE
Status: 2 ERRORs