* using log directory 'd:/Rcompile/CRANpkg/local/4.5/cobs.Rcheck'
* using R Under development (unstable) (2025-03-11 r87944 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'cobs/DESCRIPTION' ... OK
* this is package 'cobs' version '1.3-9'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'cobs' can be installed ... OK
* used C compiler: 'gcc.exe (GCC) 14.2.0'
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s] OK
* checking whether the package can be loaded with stated dependencies ... [2s] OK
* checking whether the package can be unloaded cleanly ... [2s] OK
* checking whether the namespace can be loaded with stated dependencies ... [2s] OK
* checking whether the namespace can be unloaded cleanly ... [2s] OK
* checking loading without being on the library search path ... [2s] OK
* checking whether startup messages can be suppressed ... [2s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [8s] OK
* checking Rd files ... [1s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... [0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compiled code ... OK
* checking examples ... [11s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [39s] NOTE
  Running '0_pt-ex.R' [2s]
  Running 'ex1.R' [6s]
  Running 'ex2-long.R' [6s]
  Running 'ex3.R' [2s]
  Comparing 'ex3.Rout' to 'ex3.Rout.save' ...15,16c15,16
< Warning message:
< In cobs(weight, height, knots = weight, nknots = length(weight)) :
---
> Warning messages:
> 1: In cobs(weight, height, knots = weight, nknots = length(weight)) :
18a19,20
> 2: In cobs(weight, height, knots = weight, nknots = length(weight)) :
>   drqssbc2(): Not all flags are normal (== 1), ifl : 18
  Running 'multi-constr.R' [3s]
  Comparing 'multi-constr.Rout' to 'multi-constr.Rout.save' ...56a57,80
> Warning messages:
> 1: In rq.fit.sfn(Xeq, Yeq, tau = tau, rhs = rhs, control = rqCtrl) :
>   tiny diagonals replaced with Inf when calling blkfct
> 
> 2: In rq.fit.sfn(Xeq, Yeq, tau = tau, rhs = rhs, control = rqCtrl) :
>   tiny diagonals replaced with Inf when calling blkfct
> 
> 3: In rq.fit.sfn(Xeq, Yeq, tau = tau, rhs = rhs, control = rqCtrl) :
>   tiny diagonals replaced with Inf when calling blkfct
> 
> 4: In rq.fit.sfn(Xeq, Yeq, tau = tau, rhs = rhs, control = rqCtrl) :
>   tiny diagonals replaced with Inf when calling blkfct
> 
> 5: In rq.fit.sfn(Xeq, Yeq, tau = tau, rhs = rhs, control = rqCtrl) :
>   tiny diagonals replaced with Inf when calling blkfct
> 
> 6: In rq.fit.sfn(Xeq, Yeq, tau = tau, rhs = rhs, control = rqCtrl) :
>   tiny diagonals replaced with Inf when calling blkfct
> 
> 7: In rq.fit.sfn(Xeq, Yeq, tau = tau, rhs = rhs, control = rqCtrl) :
>   tiny diagonals replaced with Inf when calling blkfct
> 
> 8: In cobs(x, y, trace = 3) :
>   drqssbc2(): Not all flags are normal (== 1), ifl : 18
136a161,178
> Warning in cobs(x, y, degree = 1, trace = 3) :
>   The algorithm has not converged after 100 iterations
> Warning messages:
> 1: In rq.fit.sfn(Xeq, Yeq, tau = tau, rhs = rhs, control = rqCtrl) :
>   tiny diagonals replaced with Inf when calling blkfct
> 
> 2: In rq.fit.sfn(Xeq, Yeq, tau = tau, rhs = rhs, control = rqCtrl) :
>   tiny diagonals replaced with Inf when calling blkfct
> 
> 3: In rq.fit.sfn(Xeq, Yeq, tau = tau, rhs = rhs, control = rqCtrl) :
>   tiny diagonals replaced with Inf when calling blkfct
> 
> 4: In rq.fit.sfn(Xeq, Yeq, tau = tau, rhs = rhs, control = rqCtrl) :
>   tiny diagonals replaced with Inf when calling blkfct
> 
> 5: In rq.fit.sfn(Xeq, Yeq, tau = tau, rhs = rhs, control = rqCtrl) :
>   tiny diagonals replaced with Inf when calling blkfct
> 
180a223,229
> Warning messages:
> 1: In rq.fit.sfn(Xeq, Yeq, tau = tau, rhs = rhs, control = rqCtrl) :
>   tiny diagonals replaced with Inf when calling blkfct
> 
> 2: In rq.fit.sfn(Xeq, Yeq, tau = tau, rhs = rhs, control = rqCtrl) :
>   tiny diagonals replaced with Inf when calling blkfct
> 
  Running 'roof.R' [3s]
  Comparing 'roof.Rout' to 'roof.Rout.save' ... OK
  Running 'small-ex.R' [2s]
  Comparing 'small-ex.Rout' to 'small-ex.Rout.save' ...23a24,25
> Warning message:
> In cobs(x, y) : drqssbc2(): Not all flags are normal (== 1), ifl : 18
  Running 'spline-ex.R' [2s]
  Comparing 'spline-ex.Rout' to 'spline-ex.Rout.save' ... OK
  Running 'temp.R' [3s]
  Comparing 'temp.Rout' to 'temp.Rout.save' ...444a445,446
> Warning in cobs(year, temp, knots.add = TRUE, degree = 1, constraint = "none",  :
>   The algorithm has not converged after 100 iterations
453a456,457
> Warning in cobs(year, temp, nknots = 9, knots.add = TRUE, degree = 1, constraint = "none",  :
>   The algorithm has not converged after 100 iterations
459,460c463,464
< coef[1:5]: -0.40655906, -0.31473700,  0.05651823, -0.05681818,  0.28681956
< R^2 = 72.56% ;  empirical tau (over all): 54/113 = 0.4778761 (target tau= 0.5)
---
> coef[1:5]: -0.39324840, -0.28115087,  0.05916295, -0.07465159,  0.31227753
> R^2 = 73.22% ;  empirical tau (over all): 63/113 = 0.5575221 (target tau= 0.5)
465a470,473
> 
>  **** ERROR in algorithm: ifl = 18
> 
> 
467a476,478
> Warning message:
> In cobs(year, temp, nknots = length(a50$knots), knots = a50$knot,  :
>   drqssbc2(): Not all flags are normal (== 1), ifl : 18
469a481,482
> Warning in cobs(year, temp, nknots = length(a50$knots), knots = a50$knot,  :
>   The algorithm has not converged after 100 iterations
475c488,490
<  [1]  10  18  21  22  47  61  68  74  78  79 102 111
---
>  [1]   1   2   9  10  17  18  20  21  22  23  26  27  35  36  42  47  48  49  52
> [20]  53  58  59  61  62  63  64  65  68  73  74  78  79  80  81  82  83  84  88
> [39]  90  91  94  98 100 101 102 104 108 109 111 112
477c492,495
<  [1]   5   8  25  38  39  50  54  77  85  97 113
---
>  [1]   3   4   5   6   7   8  11  12  13  14  15  16  19  24  25  28  29  30  31
> [20]  32  33  34  37  38  39  40  41  43  44  45  46  50  51  54  55  56  57  60
> [39]  66  67  69  70  71  72  75  76  77  85  86  87  89  92  93  95  96  97  99
> [58] 103 105 106 107 110 113
  Running 'wind.R' [8s]
* checking PDF version of manual ... [21s] OK
* checking HTML version of manual ... [4s] OK
* DONE
Status: 1 NOTE