R: Robust Bayesian Survival Analysis

# Robust Bayesian Survival Analysis

## Documentation for package ‘RoBSA’ version 1.0.3

- DESCRIPTION file
- Package NEWS
- Package README

## Help Pages

C D E G I L P R S U W misc

RoBSA-package | RoBSA: Robust Bayesian survival analysis

## -- C --

calibrate_meta_analytic | Create meta-analytic predictive prior distributions
calibrate_quartiles | Calibrate prior distributions based on quartiles
check_RoBSA | Check fitted RoBSA object for errors and warnings
check_setup | Prints summary of '"RoBSA"' corresponding to the input
contr.meandif | Mean difference contrast matrix
contr.orthonormal | Orthornomal contrast matrix

## -- D --

default_prior | Default prior distributions
diagnostics | Visualizes MCMC diagnostics for a fitted RoBSA object
diagnostics_autocorrelation | Visualizes MCMC diagnostics for a fitted RoBSA object
diagnostics_density | Visualizes MCMC diagnostics for a fitted RoBSA object
diagnostics_trace | Visualizes MCMC diagnostics for a fitted RoBSA object

## -- E --

exp-aft | Exponential AFT parametric family.
exp_aft_density | Exponential AFT parametric family.
exp_aft_hazard | Exponential AFT parametric family.
exp_aft_log_density | Exponential AFT parametric family.
exp_aft_log_hazard | Exponential AFT parametric family.
exp_aft_log_survival | Exponential AFT parametric family.
exp_aft_mean | Exponential AFT parametric family.
exp_aft_p | Exponential AFT parametric family.
exp_aft_q | Exponential AFT parametric family.
exp_aft_r | Exponential AFT parametric family.
exp_aft_sd | Exponential AFT parametric family.
exp_aft_survival | Exponential AFT parametric family.
extract_flexsurv | Extract parameter estimates from 'flexsurv' object

## -- G --

gamma-aft | Gamma AFT parametric family.
gamma_aft_density | Gamma AFT parametric family.
gamma_aft_hazard | Gamma AFT parametric family.
gamma_aft_log_density | Gamma AFT parametric family.
gamma_aft_log_hazard | Gamma AFT parametric family.
gamma_aft_log_survival | Gamma AFT parametric family.
gamma_aft_mean | Gamma AFT parametric family.
gamma_aft_p | Gamma AFT parametric family.
gamma_aft_q | Gamma AFT parametric family.
gamma_aft_r | Gamma AFT parametric family.
gamma_aft_sd | Gamma AFT parametric family.
gamma_aft_survival | Gamma AFT parametric family.
get_default_prior_aux | Default prior distributions
get_default_prior_beta_alt | Default prior distributions
get_default_prior_beta_alt, | Default prior distributions
get_default_prior_beta_null | Default prior distributions
get_default_prior_beta_null, | Default prior distributions
get_default_prior_factor_alt | Default prior distributions
get_default_prior_factor_alt, | Default prior distributions
get_default_prior_factor_null | Default prior distributions
get_default_prior_factor_null, | Default prior distributions
get_default_prior_intercept | Default prior distributions
get_default_prior_intercept, | Default prior distributions

## -- I --

is.RoBSA | Reports whether x is a RoBSA object

## -- L --

llogis-aft | Log-logistic AFT parametric family.
llogis_aft_density | Log-logistic AFT parametric family.
llogis_aft_hazard | Log-logistic AFT parametric family.
llogis_aft_log_density | Log-logistic AFT parametric family.
llogis_aft_log_hazard | Log-logistic AFT parametric family.
llogis_aft_log_survival | Log-logistic AFT parametric family.
llogis_aft_mean | Log-logistic AFT parametric family.
llogis_aft_p | Log-logistic AFT parametric family.
llogis_aft_q | Log-logistic AFT parametric family.
llogis_aft_r | Log-logistic AFT parametric family.
llogis_aft_sd | Log-logistic AFT parametric family.
llogis_aft_survival | Log-logistic AFT parametric family.
lnorm-aft | Log-normal AFT parametric family.
lnorm_aft_density | Log-normal AFT parametric family.
lnorm_aft_hazard | Log-normal AFT parametric family.
lnorm_aft_log_density | Log-normal AFT parametric family.
lnorm_aft_log_hazard | Log-normal AFT parametric family.
lnorm_aft_log_survival | Log-normal AFT parametric family.
lnorm_aft_mean | Log-normal AFT parametric family.
lnorm_aft_p | Log-normal AFT parametric family.
lnorm_aft_q | Log-normal AFT parametric family.
lnorm_aft_r | Log-normal AFT parametric family.
lnorm_aft_sd | Log-normal AFT parametric family.
lnorm_aft_survival | Log-normal AFT parametric family.

## -- P --

plot.RoBSA | Plots a fitted RoBSA object
plot_density | Survival plots for a RoBSA object
plot_hazard | Survival plots for a RoBSA object
plot_models | Models plot for a RoBSA object
plot_prediction | Survival plots for a RoBSA object
plot_survival | Survival plots for a RoBSA object
predict.RoBSA | Predict method for RoBSA objects.
print.RoBSA | Prints a fitted RoBSA object
print.summary.RoBSA | Prints summary object for RoBSA method
prior | Creates a prior distribution
prior_factor | Creates a prior distribution for factors
prior_informed | Creates an informed prior distribution based on research
prior_informed_medicine_names | Names of medical subfields from the Cochrane database of systematic reviews
prior_none | Creates a prior distribution

## -- R --

RoBSA | Fit Robust Bayesian Survival Analysis
RoBSA.get_option | Options for the RoBSA package
RoBSA.options | Options for the RoBSA package
RoBSA.package | RoBSA: Robust Bayesian survival analysis
RoBSA_control | Control MCMC fitting process
RoBSA_options | Options for the RoBSA package
RoBSA_package | RoBSA: Robust Bayesian survival analysis

## -- S --

set_autofit_control | Control MCMC fitting process
set_autofit_control, | Control MCMC fitting process
set_convergence_checks | Control MCMC fitting process
summary.RoBSA | Summarize fitted RoBSA object

## -- U --

update.RoBSA | Updates a fitted RoBSA object

## -- W --

weibull-aft | Weibull AFT parametric family.
weibull_aft_density | Weibull AFT parametric family.
weibull_aft_hazard | Weibull AFT parametric family.
weibull_aft_log_density | Weibull AFT parametric family.
weibull_aft_log_hazard | Weibull AFT parametric family.
weibull_aft_log_survival | Weibull AFT parametric family.
weibull_aft_mean | Weibull AFT parametric family.
weibull_aft_p | Weibull AFT parametric family.
weibull_aft_q | Weibull AFT parametric family.
weibull_aft_r | Weibull AFT parametric family.
weibull_aft_sd | Weibull AFT parametric family.
weibull_aft_survival | Weibull AFT parametric family.

## -- misc --

_PACKAGE | RoBSA: Robust Bayesian survival analysis