Representative and Adequate Prioritization Toolkit in R

Documentation for package ‘raptr’ version 1.0.1

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raptr: Representative and Adequate Prioritization Toolkit in R

-- A --

amount.held	Extract amount held for a solution
amount.held.RapSolved	Extract amount held for a solution
amount.target	Amount targets
amount.target.RapData	Amount targets
amount.target.RapUnsolOrSol	Amount targets
amount.target<-	Amount targets
amount.target<-.RapData	Amount targets
amount.target<-.RapUnsolOrSol	Amount targets
as.list	Convert object to list
as.list.GurobiOpts	Convert object to list
AttributeSpace	Create new AttributeSpace object
AttributeSpace-class	AttributeSpace: An S4 class to represent an attribute space.
AttributeSpaces	Create new AttributeSpaces object
AttributeSpaces-class	AttributeSpaces: An S4 class to represent a collection of attribute spaces for different species.

-- B --

blank.raster

Blank raster

-- C --

calcBoundaryData	Calculate boundary data for planning units
calcBoundaryData.PolySet	Calculate boundary data for planning units
calcBoundaryData.sf	Calculate boundary data for planning units
calcBoundaryData.SpatialPolygons	Calculate boundary data for planning units
calcSpeciesAverageInPus	Calculate average value for species data in planning units
calcSpeciesAverageInPus.sf	Calculate average value for species data in planning units
calcSpeciesAverageInPus.SpatialPolygons	Calculate average value for species data in planning units
calcSpeciesAverageInPus.SpatialPolygonsDataFrame	Calculate average value for species data in planning units
casestudy_data	Case-study dataset for a conservation planning exercise
convert2PolySet	Convert object to PolySet data
convert2PolySet.sf	Convert object to PolySet data
convert2PolySet.SpatialPolygons	Convert object to PolySet data
convert2PolySet.SpatialPolygonsDataFrame	Convert object to PolySet data
cs_pus	Case-study dataset for a conservation planning exercise
cs_space	Case-study dataset for a conservation planning exercise
cs_spp	Case-study dataset for a conservation planning exercise

-- D --

DemandPoints	Create new DemandPoints object
DemandPoints-class	DemandPoints: An S4 class to represent demand points
dp.subset	Subset demand points
dp.subset.RapData	Subset demand points
dp.subset.RapUnsolOrSol	Subset demand points

-- G --

GurobiOpts	Create GurobiOpts object
GurobiOpts-class	GurobiOpts: An S4 class to represent Gurobi parameters

-- I --

is.GurobiInstalled

Test if Gurobi is installed

-- L --

logging.file	Log file
logging.file.RapResults	Log file
logging.file.RapSolved	Log file

-- M --

make.DemandPoints	Generate demand points for RAP
make.RapData	Make data for RAP using minimal inputs
ManualOpts	Create ManualOpts object
ManualOpts-class	ManualOpts: An S4 class to represent parameters for manually specified solutions
maximum.targets	Maximum targets
maximum.targets.RapUnsolOrSol	Maximum targets

-- N --

names	Names
names.RapData	Names
names.RapUnsolOrSol	Names
names<-.RapData	Names
names<-.RapUnsolOrSol	Names

-- P --

PlanningUnitPoints	Create new PlanningUnitPoints object
PlanningUnitPoints-class	PlanningUnitPoints: An S4 class to represent planning units in an attribute space
plot	Plot object
plot-method	Plot object
PolySet	PolySet
PolySet-class	PolySet
print	Print objects
print.AttributeSpace	Print objects
print.AttributeSpaces	Print objects
print.GurobiOpts	Print objects
print.ManualOpts	Print objects
print.RapData	Print objects
print.RapReliableOpts	Print objects
print.RapResults	Print objects
print.RapSolved	Print objects
print.RapUnreliableOpts	Print objects
print.RapUnsolved	Print objects
prob.subset	Subset probabilities above a threshold
prob.subset.RapData	Subset probabilities above a threshold
prob.subset.RapUnsolOrSol	Subset probabilities above a threshold
pu.subset	Subset planning units
pu.subset.RapData	Subset planning units
pu.subset.RapUnsolOrSol	Subset planning units

-- R --

randomPoints	Sample random points from a SpatRaster
rap	Generate prioritizations using RAP
RapData	Create new RapData object
RapData-class	RapData: An S4 class to represent RAP input data
RapOpts	RapOpts class
RapOpts-class	RapOpts class
RapReliableOpts	Create RapReliableOpts object
RapReliableOpts-class	RapReliableOpts: An S4 class to represent input parameters for the reliable formulation of RAP.
RapResults	Create RapResults object
RapResults-class	RapResults: An S4 class to represent RAP results
RapSolved	Create new RapSolved object
RapSolved-class	RapSolved: An S4 class to represent RAP inputs and outputs
raptr	raptr: Representative and Adequate Prioritization Toolkit in R
raptr-deprecated	Deprecation notice
RapUnreliableOpts	Create RapUnreliableOpts object
RapUnreliableOpts-class	RapUnreliableOpts: An S4 class to represent parameters for the unreliable RAP problem
RapUnsolved	Create a new RapUnsolved object
RapUnsolved-class	RapUnsolved: An S4 class to represent RAP inputs
rrap.proportion.held	Proportion held using reliable RAP formulation.

-- S --

score	Solution score
score.RapResults	Solution score
score.RapSolved	Solution score
selections	Extract solution selections
selections.RapResults	Extract solution selections
selections.RapSolved	Extract solution selections
show	Show objects
show-method	Show objects
sim.pus	Simulate planning units
sim.space	Simulate attribute space data for RAP
sim.space.sf	Simulate attribute space data for RAP
sim.space.SpatialPolygons	Simulate attribute space data for RAP
sim.space.SpatRaster	Simulate attribute space data for RAP
sim.species	Simulate species distribution data for RAP
sim.species.sf	Simulate species distribution data for RAP
sim.species.SpatialPolygons	Simulate species distribution data for RAP
sim.species.SpatRaster	Simulate species distribution data for RAP
simulated_data	Simulated dataset for a conservation planning exercise
sim_rs	Simulated dataset for a conservation planning exercise
sim_ru	Simulated dataset for a conservation planning exercise
solve	Solve RAP object
solve-method	Solve RAP object
SolverOpts	SolverOpts class
SolverOpts-class	SolverOpts class
space.held	Extract attribute space held for a solution
space.held.RapSolved	Extract attribute space held for a solution
space.plot	Plot space
space.plot.RapData	Plot space
space.plot.RapSolved	Plot space
space.plot.RapUnsolved	Plot space
space.target	Attribute space targets
space.target.RapData	Attribute space targets
space.target.RapUnsolOrSol	Attribute space targets
space.target<-	Attribute space targets
space.target<-.RapData	Attribute space targets
space.target<-.RapUnsolOrSol	Attribute space targets
SpatialPolygons2PolySet	Deprecation notice
spp.plot	Plot species
spp.plot.RapData	Plot species
spp.plot.RapSolved	Plot species
spp.plot.RapUnsolved	Plot species
spp.subset	Subset species
spp.subset.RapData	Subset species
spp.subset.RapUnsolOrSol	Subset species
summary	Summary of solutions

-- U --

update	Update object
update.GurobiOpts	Update object
update.ManualOpts	Update object
update.RapData	Update object
update.RapReliableOpts	Update object
update.RapUnreliableOpts	Update object
update.RapUnsolOrSol	Update object
urap.proportion.held	Proportion held using unreliable RAP formulation.