Interval Mapping for Quantitative Trait Loci Underlying Neighbor Effects

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Documentation for package ‘rNeighborQTL’ version 1.1.2

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

calc_neiprob	Calculating a set of neighbor QTL effects from conditional genotype probabilities
calc_pve	Calculating phenotypic variation explained by neighbor effects
decompose_genoprobs	Decomposition of conditional genotype probabilities
eff_neighbor	Estimation of self and neighbor QTL effects across a genome
genoprobs2selfprobs	Calculating a set of self QTL effects from conditional genotype probabilities
get_markers	Reshaping marker information
int_neighbor	Testing marker-by-marker epistasis in neighbor QTL effects
logLik_glm.fit	Calculating log-likelihood in generalized linear models
min_dist	Calculating the minimum distance
neiprob	Calculating neighbor QTL effects
perm_neighbor	Permutation tests for neighbor effects with a QTL model
plot_eff	Plot self and neighbor QTL effects across a genome
plot_nei	Plot LOD score for self or neighbor QTL effects
scan_neighbor	Genome scan for neighbor effects with a QTL model
selfprob	Calculating self QTL effects
sim_nei_qtl	Phenotype simulation for neighbor QTL effects