Analyse Biological Time-Series Data

Documentation for package ‘phase’ version 1.2.9

allActograms	Generate actograms
allPeriodogramsAct	Periodogram analysis for activity data
allPeriodogramsSleep	Periodogram analysis for sleep data
allSomnograms	Generate actograms for sleep data (Somnograms)
anticipationAct	Compute anticipation for activity data
binData	Bin activity data to desired intervals
CoM	Objectively quantify and visualise phases and calculate consolidation in pre-defined time-windows
df	Example DAM data
indActogram	Plot actogram of individual fly
indPeriodogramAct	Periodogram plot for activity data of individual flies
indPeriodogramSleep	Periodogram plot for sleep data of individual flies
indSomnogram	Generate actograms for sleep data (Somnograms) for individual flies
peakIdentifier	Phase identifier for activity data
profilesAct	Compute and plot activity profiles
profilesSleep	Compute and plot sleep profiles
rosePlotsAct	Generate rose plots for averaged activity data
rosePlotsSleep	Generate rose plots for averaged sleep data
sleepData	Equivalent of binData() but for sleep data
sleepOnsetBoutLength	Computes, tabulates and plots day-time and night-time onset of sleep bouts and their respective lengths
sleepStages	Plot sleep stages in individual flies
sleepStat	Computes and tabulates day-time and night-time sleep statistics
transitionProbs	Plot and generate data for transition frequencies between sleep stages
trimData	Trim data for downstream analyses