Evidential Analysis of Genetic Association Data

Documentation for package ‘evian’ version 2.1.0

adjustModel	Genotype coding adjusement
calculateEvianMLE	Profile likelihood calculation using regression models
calculateGLR	Profile likelihood calculation using regression models
densityPlot	Plot profile likelihood density for a single SNP.
evian	Evidential analysis for genetic data using regression models
evian_binary_bim	Example map data for evian_binary_raw.
evian_binary_raw	Example dataset with a binary outcome.
evian_linear_bim	Example map data for evian_linear_raw.
evian_linear_raw	Example dataset with a quantative outcome.
expandBound	A recursive function that expands the grid search for MLE.
getGridBound	Obtain the range of the grid where MLE will be searched at
glr	Generalized Likelihood Ratio test
glr_plot	Plot methods for multiple glr result in a genomic region.
multiLine_plot	Plot methods for multiple likelihood intervals in a genomic region.
robust_forCluster	Robust adjustment function
subsetData	interior subsetting function