Evolutionary Trait Divergence Between Sister Species and Other
Paired Lineages
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Documentation for package ‘diverge’ version 2.0.6
Help Pages
| diverge-package | Evolutionary Trait Divergence Between Sister Species and Other Paired Lineages |
| all_birds | Example Tree |
| bootstrap_ci | Estimate confidence intervals using bootstrap |
| diverge | Evolutionary Trait Divergence Between Sister Species and Other Paired Lineages |
| expected_val | Expected value through time |
| extract_sisters | Extract sister pairs |
| find_mle | Find Maximum Likelihood Estimates |
| likelihood_func | Functions for negative log likelihood |
| model_error_rate | Calculate error rate in model selection |
| model_generator | Generate parameter~gradient linear models |
| model_select | Select the best fit model of trait divergence |
| param_grid | Generate parameter grid |
| random_walks | Simulate and plot trait evolution through time |
| re_estimator | Estimate model parameters |
| simulate_div | Simulate trait divergence |