Single-Cell RNA-Seq Gene Expression Recovery

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Documentation for package ‘SAVER’ version 1.1.2

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

SAVER-package	SAVER: Single-cell Analysis Via Expression Recovery
calc.a	Optimizes variance
calc.b	Optimizes variance
calc.estimate	Calculate estimate
calc.estimate.mean	Calculate estimate
calc.estimate.null	Calculate estimate
calc.k	Optimizes variance
calc.loglik.a	Calculates marginal likelihood
calc.loglik.b	Calculates marginal likelihood
calc.loglik.k	Calculates marginal likelihood
calc.maxcor	Calculate maximum correlation
calc.post	Calculates SAVER posterior
combine.saver	Combines SAVER
cor.cells	Calculates gene-to-gene and cell-to-cell SAVER correlation
cor.genes	Calculates gene-to-gene and cell-to-cell SAVER correlation
expr.predict	Calculates SAVER prediction.
get.mu	Output prior predictions
linnarsson	Mouse brain single-cell RNA-seq dataset
linnarsson_saver	SAVER recovered mouse brain single-cell RNA-seq dataset
sample.saver	Samples from SAVER
saver	Runs SAVER
saver.fit	Fits SAVER
saver.fit.mean	Fits SAVER
saver.fit.null	Fits SAVER