Useful Wrappers Around Commonly Used Functions

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Documentation for package ‘wrappedtools’ version 0.9.7

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

bt	Add backticks to names or remove them
cat_desc_stats	Compute absolute and relative frequencies.
cat_desc_table	Compute absolute and relative frequencies for a table.
cn	Shortcut for colnames()
ColSeeker	Find numeric index and names of columns based on class(es) and patterns
compare2numvars	Comparison for columns of numbers for 2 groups
compare2qualvars	Comparison for columns of factors for 2 groups
compare_n_numvars	Comparison for columns of Gaussian or ordinal measures for n groups
compare_n_qualvars	Comparison for columns of factors for more than 2 groups with post-hoc
cortestR	Correlations with significance
detect_outliers	Find outliers based on IQR
eGFR	Estimation of glomerular filtration rate (eGFR) based on sex, age, and either serum creatinine and/or cystatin C
faketrial	Results from a simulated clinical trial with interaction effects.
FindVars	Find numeric index and names of columns based on patterns
flex2rmd	Transform flextable to rmd if non-interactive
formatP	Re-format p-values, avoiding rounding to 0 and adding surprisal if requested
ggcormat	Print graphical representation of a correlation matrix.
glmCI	Confidence interval for generalized linear models
identical_cols	Find and optionally remove identical columns in a data frame.
ksnormal	Kolmogorov-Smirnov-Test against Normal distribution
label_outliers	Add labels to outliers in boxplot/beeswarm.
logrange_1	Predefined sets of labels for plots with log-scaled axes
logrange_123456789	Predefined sets of labels for plots with log-scaled axes
logrange_12357	Predefined sets of labels for plots with log-scaled axes
logrange_15	Predefined sets of labels for plots with log-scaled axes
logrange_5	Predefined sets of labels for plots with log-scaled axes
markSign	Convert significance levels to symbols
meansd	Compute mean and sd and put together with the ± symbol.
meanse	Compute mean and standard error of mean and put together with the ± symbol.
mean_cl_boot	Compute confidence interval of mean by bootstrapping.
medianse	Compute standard error of median.
median_cl_boot	Compute confidence interval of median by bootstrapping.
median_cl_boot_gg	Rename output from median_cl_boot for use in ggplot.
median_quart	Compute median and quartiles and put together.
pairwise_fisher_test	Pairwise Fisher's exact tests
pairwise_ordcat_test	Pairwise comparison for ordinal categories
pairwise_t_test	Extended pairwise t-test
pairwise_wilcox_test	Pairwise Wilcoxon tests
pdf_kable	Enhanced knitr::kable with latex
plot_LB	Lineweaver-Burk diagram
plot_MM	Michaelis-Menten enzyme kinetics model and plot
print_kable	Enhanced knitr::kable with definable number of rows and/or columns for splitting
roundR	Automatic rounding to a reasonable length, based on largest number
SEM	Standard Error of Mean.
se_median	Compute standard error of median
surprisal	Compute surprisal aka Shannon information from p-values
tab.search	Search within data.frame or tibble
t_var_test	Independent sample t-test with test for equal variance
var_coeff	Compute coefficient of variance.
WINratio	Comparison for groups in clinical trials based on all possible combinations of subjects