2D and 3D Movement-Based Kernel Density Estimates (MKDEs)

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Documentation for package ‘mkde’ version 0.4

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mkde-package Movement-based kernel density estimates (MKDEs) in 2 or 3 spatial dimensions.
computeAreaRaster Calculate cell areas from elevation raster.
computeContourValues Find thresholds for contour intervals
computeSizeMKDE Compute the area or volume of an MKDE.
condor California condor locations
condordem A RasterLayer containing a digital elevation model (DEM) for the condor data
condordem120 A RasterLayer containing a digital elevation model (DEM) for the condor data
deselectLocationsOutsideBounds Flag 3D locations with out-of-bounds z-coordinates
deselectNonMovementSteps Flag non-movements so they are excluded from MKDE estimation
dugong Dugong locations
dugongdem A RasterLayer containing bathymetry for the dugong data
estVarMKDE Estimate move variances for 3D MKDE.
initializeAreaRaster Initialize an area raster for a 2.5D MKDE.
initializeDensity Calculate raster of density values for MKDE.
initializeMKDE2D Set up a 2D MKDE object.
initializeMKDE3D Set up a 3D MKDE object.
initializeMovementData Initialize a movement data list
mkde Movement-based kernel density estimates (MKDEs) in 2 or 3 spatial dimensions.
mkde2Dgrid Movement-based kernel density estimate (MKDE) in 2D using Rcpp
mkde2Dinteraction Probability of 2D spatial-temporal interaction.
mkde3Dgrid Movement-based kernel density estimate (MKDE) in 3D using Rcpp
mkde3Dinteraction Probability of 3D spatial-temporal interaction.
mkdeToTerra MKDE to RasterLayer or RasterStack
panda Giant panda locations
pandadem A RasterLayer containing a digital elevation model (DEM) for the panda data
plotMKDE Make an image plot of an MKDE.
setMaximumZfromConstant Initialize maximum allowable z-axis coordinates to a constant value.
setMaximumZfromRaster Initialize maximum z-axis value from a raster
setMinimumZfromConstant Set minimum z-axis value to a constant.
setMinimumZfromRaster Set minimum z-axis values from a raster
writeInterpolatedPathVTK Write path to VTK.
writeObservedLocationVTK Write observed locations to VTK.
writeRasterToVTK Write a 2D raster to XDMF XML wrapper and binary data file.
writeRasterToXDMF Write a 2D raster to XDMF XML wrapper and binary data file.
writeToGRASS Write MKDE to a GRASS GIS 3D ASCII raster file.
writeToVTK Write MKDE to an ASCII Visualization Tool Kit (VTK) structured grid file.
writeToXDMF Write 3D MKDE to XDMF XML wrapper and binary data file.