| Clustering | Class Clustering |
| Clustering, | Overlap |
| Clustering-class | Class Clustering |
| Clustering-method | Overlap |
| Clusters | Clustering. |
| Clusters-method | Clustering. |
| Data2D | Synthetic Datasets (Two Dimensional) |
| Data3D | Synthetic Datasets (Three Dimensional) |
| extTransitionCan | External Transition Candidate. |
| extTransitionCan-method | External Transition Candidate. |
| extTransitionCount | External Transition Count |
| extTransitionCount-method | External Transition Count |
| internalTransition | Internal Transition Candidates. |
| internalTransition-method | Internal Transition Candidates. |
| intTransitionCan | Internal Transition Candidates |
| intTransitionCan-class | Internal Transition Candidates |
| Monic | An S4 class that contain time steps |
| moplot | plot Method for output |
| moplot-method | plot Method for output |
| OverLap | Overlap between clusters |
| Overlap | Overlap |
| OverLap, | Overlap |
| OverLap,ANY,ANY-methods | Overlap |
| OverLap-class | Overlap between clusters |
| Overlap-method | Overlap |
| show-method | Show Method for output |
| Transition | Monitor Transitions in Cluster Solutions. |
| TransitionCan | External Transition Candidates |
| TransitionCan-class | External Transition Candidates |
| TransitionCount | External Transition Count |
| TransitionCount-class | External Transition Count |