Analysis of Event Data with Two Time Scales

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Documentation for package ‘TwoTimeScales’ version 1.0.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

covariates_plot	Plot of the covariates' effects
cumhaz2ts	Cumulative hazard over two time scales
cuminc2ts	Cumulative incidence surface over two time scales
exposures_events_1d	Bin data on one time scale
exposures_events_2d	Bin data on two time scales
exposures_events_Lexis	Bin data on the Lexis diagram
fit1ts	Fit a smooth hazard model with one time scale
fit1tsmodel_ucminf	Numerical optimization of the 1ts model
fit2ts	Fit a smooth hazard model with two time scales
fit2tsmodel_ucminf	Numerical optimization of the 2ts model
getAIC_BIC_LMM	Calculates AIC and BIC from object fitted via LMMsolver
get_aic_fit_1d	Return the AIC of 1ts model
get_aic_fit_2d	Return the AIC of 2ts model
get_bic_fit_1d	Return the BIC of 1ts model
get_bic_fit_2d	Return the BIC of 2ts model
get_hazard_1d	Get estimated (log-)hazard values with 1 time scale
get_hazard_1d_LMM	Get estimated (log-)hazard values with 1 time scale
get_hazard_2d	Get estimated (log-)hazard surface with 2 time scales
get_hazard_2d_LMM	Get estimated (log-)hazard surface with 2 time scales
get_hr	Get the Hazard Ratios with their Standard Errors
GLAM_1d_covariates	Fit the 1d GLAM with covariates
GLAM_2d_covariates	Fit the 2d GLAM with covariates
GLAM_2d_no_covariates	Fit the 2d GLAM without covariates
grid_search_1d	Grid search for the optimal 1ts model
grid_search_2d	Grid search for the optimal 2ts model
haz2tsLMM_summary	Summary function for object of class 'haz2tsLMM'
haz2ts_summary	Summary function for object of class 'haz2ts'
imageplot_2ts	Image Plot of 2ts hazard
imageplot_SE	Image Plot of Standard Errors for the 2ts hazard
iwls_1d	Iterative Weighted Least Squares algorithm for 1ts model
make_bins	Construct bins over one or more time axes
plot.haz1ts	Plot method for a haz1ts object.
plot.haz1tsLMM	Plot method for a haz1ts object.
plot.haz2ts	Plot method for a haz2ts object.
plot.haz2tsLMM	Plot method for a haz2tsLMM object.
plot_slices	Plot slices of the (log-) hazard
prepare_data	Prepare raw data by binning them in 1d or 2d
prepare_data_LMMsolver	Process data to fit model with LMMsolver
print.data2ts	Print method for a 'data2ts' object
reccolon2ts	Data from the chemotherapy for stace B/C colon cancer study
surv2ts	Survival function with two time scales