Continuous Time Distance-Based and Network-Based Individual Level Models for Epidemics

Documentation for package ‘EpiILMCT’ version 1.1.7

as.epidat	Continuous Time level information of an Epidemic
contactnet	Generate binary adjacency matrix contact networks
datagen	Generate epidemics from distance-based and/or network-based continuous-time ILMs.
epictmcmc	Markov Chain Monte Carlo-based tool for analyzing (SIR/SINR) distance-based/network-based individual-level disease data.
loglikelihoodepiILM	Calculates the log likelihood
NetworkData	Simulated epidemic data set from a network-based SIR ILM
NetworkDataSINR	Simulated epidemic data set from a network-based SINR ILM
plot.contactnet	Plot the contact network of 'contactnet' object
plot.datagen	S3 method to plot summary of epidemic.
plot.epictmcmc	Plot the output of 'epictmcmc' object
print.epictmcmc	Prints the contents of an 'epictmcmc' object to the console
print.summary.epictmcmc	Summary method for 'epictmcmc' objects
SpatialData	Simulated epidemic data set from a distance-based SIR ILM
SpatialNetData	Simulated epidemic data set from a distance and network-based SIR ILM
summary.epictmcmc	Summary method for 'epictmcmc' objects
tswv	Tomato Spotted Wilt Virus data