Calculate 'EMT' Scores Based on 'Omics' Data
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Documentation for package ‘EMTscore’ version 0.1.1
Help Pages
| AUCellfunc | AUCell EMT Score Calculation |
| cell_annotation_file | cell_annotation_file |
| Execute_AUCell | AUCell methods to calculate EMT score |
| Execute_E_M_plot | present EMT score result |
| Execute_M_dimension_plot | present M dimension score result |
| Execute_nnPCA | nnPCA methods to calculate EMT score |
| Execute_nnPCA_plot | present EM score and M dimension score result |
| Execute_SCSE | SCSE methods to calculate EMT score |
| Execute_ssGSEA | ssGSEA methods to calculate EMT score |
| Panchy_et_al_E_signature | Panchy_et_al_E_signature |
| Panchy_et_al_M_signature | Panchy_et_al_M_signature |
| plot_heatmap_function | present result of heat map of genes that contribute to M score of dimension 1 and disension 2 |
| SingleCellSigExplorer | SingleCellSigExplorer |