Comprehensive Batch Effect Diagnostics and Harmonization
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Documentation for package ‘ComBatFamQC’ version 1.0.6
Help Pages
| .biweight_midvar | Biweight Midvariance Calculation |
| adni | Harmonization Data |
| age_df | Age Trajectory Data |
| age_list_gen | Age Trend Estimates Generation |
| age_save | Export Brain ROI Age Trends |
| age_shiny | Lifespan Age Trends |
| age_table_gen | Generate Age Trend Summary Table |
| age_trend_plot | Generate Age Trend Plot |
| combat_harm | ComBatFamily Harmonization |
| combat_plot_gen | Generate Diagnostic Plots for Batch Effect Analysis |
| combat_table_gen | Generate Diagnostic Tables for Batch Effect Analysis |
| comfam | ComBat Family Harmonization |
| comfam_shiny | Batch Effect Interactive Visualization |
| covfam | CovBat Family Harmonization |
| customize_percentile | Generate Predicted Quantiles for Age Trends |
| cus_result_gen | Generate Customized Predicted Quantiles List |
| data_prep | Data Preparation |
| diag_save | Export Batch Effect Diagnosis Results |
| eb_check | EB Assumption Check |
| form_gen | ComBatFamily Model Formula Generations |
| getQuantileRefactored | Compute Quantile Functions for a Predictor in a GAMLSS Model |
| interaction_gen | Interaction Term Generation |
| model_gen | Model Generations |
| predict.comfam | Apply Harmonization to New Data |
| residual_gen | Post Harmonization Residual Generation |
| visual_prep | Batch Effect Diagnostic Visualization Preparation |