Implement Descriptive Studies Using the Common Data Model

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Documentation for package ‘Characterization’ version 2.1.3

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

cleanIncremental	Removes csv files from folders that have not been marked as completed and removes the record of the execution file
cleanNonIncremental	Removes csv files from the execution folder as there should be no csv files when running in non-incremental model
computeDechallengeRechallengeAnalyses	Compute dechallenge rechallenge study
computeRechallengeFailCaseSeriesAnalyses	Compute fine the subjects that fail the dechallenge rechallenge study
computeTimeToEventAnalyses	Compute time to event study
createAggregateCovariateSettings	Create aggregate covariate study settings
createCharacterizationSettings	Create the settings for a large scale characterization study
createCharacterizationTables	Create the results tables to store characterization results into a database
createDechallengeRechallengeSettings	Create dechallenge rechallenge study settings
createDuringCovariateSettings	Create during covariate settings
createSqliteDatabase	Create an sqlite database connection
createTimeToEventSettings	Create time to event study settings
exampleOmopConnectionDetails	create a connection detail for an example GI Bleed dataset from Eunomia
getDbDuringCovariateData	Extracts covariates that occur during a cohort
insertResultsToDatabase	Upload the results into a result database
loadCharacterizationSettings	Load the characterization settings previously saved as a json file
runCharacterizationAnalyses	execute a large-scale characterization study
saveCharacterizationSettings	Save the characterization settings as a json
viewCharacterization	viewCharacterization - Interactively view the characterization results